View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310_high_3 (Length: 505)
Name: NF4310_high_3
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 47321149 - 47321315
Alignment:
| Q |
31 |
taccaagtaaaaatcaaggttaaaagacaatctcacaacattaactaactactgctaaatttaaaataactttgatttctctatttgtaatcaaagcatg |
130 |
Q |
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| T |
47321149 |
taccaagtaaaaatcaaggttaaaagacaatctcacaacattaactaactactgctaaatttaaaataactttgatttctctatttgtaatcaaagcatg |
47321248 |
T |
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| Q |
131 |
accaactgtattacacatagaaagcaaattcacataaatcataaacaaattcctcacattattataa |
197 |
Q |
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| T |
47321249 |
accaactgtattacacatagaaagcaaattcacataaatcataaacaaattcctcacattattataa |
47321315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 391 - 501
Target Start/End: Original strand, 47321319 - 47321430
Alignment:
| Q |
391 |
ttctccaattgttccagcttcttcgatctttctgtgtcagcttcacctgttccaactcttacagctttgaaaagcttcaatatttct-aaaattccatca |
489 |
Q |
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| T |
47321319 |
ttctccaattgttccagcttcttcgatctttctgtgtcagcttcacctgttccaactcttacagctttgaaaagcttcaatatttctaaaaaatccatca |
47321418 |
T |
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| Q |
490 |
ttcttctcactc |
501 |
Q |
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| T |
47321419 |
ttcttttcactc |
47321430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 47317870 - 47317908
Alignment:
| Q |
85 |
ctaaatttaaaataactttgatttctctatttgtaatca |
123 |
Q |
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| T |
47317870 |
ctaaatttaaagtaactttgatttatctatttgtaatca |
47317908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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