View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310_high_9 (Length: 250)
Name: NF4310_high_9
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 4359400 - 4359177
Alignment:
| Q |
11 |
atgaagcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctaaatgtttttgctatt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4359400 |
atgaagcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaattgaatgttgattactagctaaatgtttttgctatt |
4359301 |
T |
|
| Q |
111 |
taagattgagatgtttaaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
4359300 |
taagattgagatgtttaaaatctagactttcttatttaaccaaaaacaaatattaaaaatccataatataaaacaaagtatatgaagttcttacggtatg |
4359201 |
T |
|
| Q |
211 |
ttctaacaagacatcaatcacatc |
234 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
4359200 |
ttctaacaagacatcaatcacatc |
4359177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 4343935 - 4343715
Alignment:
| Q |
13 |
gaagcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagct-aaatg-tttttgctatt |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | || |
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| T |
4343935 |
gaagcacaaactgattcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctcaaatgttttttgttttt |
4343836 |
T |
|
| Q |
111 |
taagattgagatgttt-aaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatat---aaaacaaagcatatgaagttcttacgg |
206 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||| ||||| || |||||| | |
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| T |
4343835 |
taagattgagatatttcaaaatctagactttcttatttaaccagaaacaaatattgaaaatccagaatataaaaaaataaagtatatgtagatcttacag |
4343736 |
T |
|
| Q |
207 |
tatgttctaacaagacatcaa |
227 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
4343735 |
tatgttctaacaagacatcaa |
4343715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 4334450 - 4334319
Alignment:
| Q |
101 |
ttttgctatttaagattgagatgtttaaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttc |
200 |
Q |
| |
|
||||||| || ||| ||||||| ||| ||||||||| |||||||||||||||||||||||| || |||||||| ||| |||||||||| ||| ||||||| |
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| T |
4334450 |
ttttgcttttaaagtttgagatattttaaatctagattttcttatttaaccaaaaacaaat-tttaaaatcca-aatttaaaacaaagtataagaagttc |
4334353 |
T |
|
| Q |
201 |
ttacggtatgttctaacaagacatcaatcacatc |
234 |
Q |
| |
|
|||| ||||||||| |||| ||||||| |||||| |
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|
| T |
4334352 |
ttacagtatgttctgacaatacatcaagcacatc |
4334319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 4352199 - 4351996
Alignment:
| Q |
26 |
attcacaaccaaactaatattcaaaacttctgtgctaacaacaacaaaagtgaatgttgattactagctaaatgtttttgctatttaagattgagatgtt |
125 |
Q |
| |
|
||||||||||||||||||||| ||| ||| || |||||||||| || | ||||||||||||||||||| || |||| |||| ||||||| || |
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|
| T |
4352199 |
attcacaaccaaactaatattgaaagcttttgcgctaacaacagcacagatgaatgttgattactagctcaaa-----tgcttactaagtttgagatatt |
4352105 |
T |
|
| Q |
126 |
taaaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatc |
225 |
Q |
| |
|
| || | | | |||| |||||||| ||||||||||||| ||||| ||||| |||||||||| ||||||||||||||| ||||||| | |||| ||||| |
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|
| T |
4352104 |
ttcaacccaaattttcatatttaactaaaaacaaatatttaaaatacagaacttaaaacaaagtatatgaagttcttacagtatgttttgacaatacatc |
4352005 |
T |
|
| Q |
226 |
aatcacatc |
234 |
Q |
| |
|
|| |||||| |
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|
| T |
4352004 |
aagcacatc |
4351996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 4125569 - 4125675
Alignment:
| Q |
128 |
aaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaa |
227 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||||| |||| | ||||| |
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|
| T |
4125569 |
aaatcgagaatttcttatttaaccaaaaacagatattttaaatcaagaatttaaaacaaagtatatgaaattcttaccgtatgttctgacaatatatcaa |
4125668 |
T |
|
| Q |
228 |
tcacatc |
234 |
Q |
| |
|
||||||| |
|
|
| T |
4125669 |
tcacatc |
4125675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 4322231 - 4322337
Alignment:
| Q |
128 |
aaatctagactttcttatttaaccaaaaacaaatattaaaaatccagaatataaaacaaagcatatgaagttcttacggtatgttctaacaagacatcaa |
227 |
Q |
| |
|
||||||||| |||||||||| ||||| ||||||| || || |||||| |||||||||| ||||||||||||||| ||||||||| |||| ||||||| |
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|
| T |
4322231 |
aaatctagatcttcttatttactcaaaataaaatatttaatattcagaatttaaaacaaagtatatgaagttcttacagtatgttctgacaatacatcaa |
4322330 |
T |
|
| Q |
228 |
tcacatc |
234 |
Q |
| |
|
|||||| |
|
|
| T |
4322331 |
gcacatc |
4322337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 4334517 - 4334462
Alignment:
| Q |
13 |
gaagcacaaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaaca |
68 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| ||| || |||||||||| |
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|
| T |
4334517 |
gaagcacaaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca |
4334462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 5396020 - 5395983
Alignment:
| Q |
13 |
gaagcacaaaatgattcacaaccaaactaatattcaaa |
50 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
5396020 |
gaagcacaaaacgattcacaaccaaactaattttcaaa |
5395983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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