View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310_low_1 (Length: 633)
Name: NF4310_low_1
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 5 - 613
Target Start/End: Complemental strand, 50972240 - 50971632
Alignment:
| Q |
5 |
gagtgagaagaattgattcat-aaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttg |
103 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50972240 |
gagtgagaagaattgattcatcaaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgaaatgcatgtgaggaatttgtttacttg |
50972141 |
T |
|
| Q |
104 |
atctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttattgcctgcttcatgc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50972140 |
atctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttattgcctgcttcatgc |
50972041 |
T |
|
| Q |
204 |
tttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50972040 |
tttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcat--gtgttctggcctctatttttgacacttttatagtctaactc |
50971943 |
T |
|
| Q |
304 |
aatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaacggaagcagcaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50971942 |
aatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaatggaagcagcaa |
50971843 |
T |
|
| Q |
404 |
ggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgtatgttgaagttatacg |
503 |
Q |
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| T |
50971842 |
ggttgataaagaaaatactgtccaaaagaatgaaattctcttcaggattatatgctctttatccagtccaaaagaaaataccgtatgttgaagttatatg |
50971743 |
T |
|
| Q |
504 |
gtaaatctgttcatcattttatatgctctttatctctgtttctctattctctttctttgtttcactgctca-nnnnnnncttaggctatgacttgagttt |
602 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50971742 |
gtaaatctgttcatcattttatatgctctttatctctttttctctattctctttctttgtttcactgctcattttttttcttaggctatgacttgagttt |
50971643 |
T |
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| Q |
603 |
tgaggtatttt |
613 |
Q |
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||||||||||| |
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| T |
50971642 |
tgaggtatttt |
50971632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 613
Target Start/End: Complemental strand, 17573802 - 17573726
Alignment:
| Q |
537 |
ctctgtttctctattctctttctttgtttcactgctcannnnnnncttaggctatgacttgagttttgaggtatttt |
613 |
Q |
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| T |
17573802 |
ctctgtttctctgctctctttctctgtttcactgctcattttcttcttaggccatgacttaagttttgaggtatttt |
17573726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 278 - 450
Target Start/End: Original strand, 9008773 - 9008945
Alignment:
| Q |
278 |
tttttgacacttttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgtt |
377 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||| |
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| T |
9008773 |
tttttaacacttttatagtctaactcaatataattgcttagatttcatgcaggacacacttcacaaccacattggcatcaatgggtatatagatgatgtt |
9008872 |
T |
|
| Q |
378 |
gaagctatagaaaacggaagcagcaaggttgataaagaaaatactgtccaaaagaatgaaattctcttcagga |
450 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9008873 |
gaagctatagaaaatggaagcaacaaggttgataaagaaaatacagtccaaaagaatgaaattctcttcagga |
9008945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 298 - 438
Target Start/End: Complemental strand, 16519630 - 16519490
Alignment:
| Q |
298 |
taactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagctatagaaaacggaag |
397 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||||||||| | || ||| |||| |||||| |||||||||| ||||||||||||||| ||||| |
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| T |
16519630 |
taactcaatataattgtttaaacttcatgcaggaaacacttcacaagcacaatggtagcagtgagtccatagatgatgctgaagctatagaaaatggaag |
16519531 |
T |
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| Q |
398 |
cagcaaggttgataaagaaaatactgtccaaaagaatgaaa |
438 |
Q |
| |
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|| |||||||| |||||||| | || ||||||||||||| |
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| T |
16519530 |
caaaaaggttgacaaagaaaagatagttcaaaagaatgaaa |
16519490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 500221 - 500145
Alignment:
| Q |
243 |
atatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactcaatataattgcttaaa |
319 |
Q |
| |
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|||||||| ||||||||||||| || |||| |||||||| ||||||||||| |||||||||||||||||| ||||| |
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| T |
500221 |
atatctttcgtttttcatatgttttatggcttctattttctacacttttatattctaactcaatataattgtttaaa |
500145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 36870961 - 36870901
Alignment:
| Q |
322 |
tcatgcaggacacacttcacaacctcattggcagcaatgagtctatagatgatgttgaagc |
382 |
Q |
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||||||| || ||||||||||||| |||||| |||||||||||||||||||| |||||||| |
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| T |
36870961 |
tcatgcaagaaacacttcacaaccacattggtagcaatgagtctatagatgacgttgaagc |
36870901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 4133355 - 4133408
Alignment:
| Q |
44 |
gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt |
97 |
Q |
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|||||| ||||||||| |||| |||||||||| |||||||| ||||||||||| |
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| T |
4133355 |
gtgtttcgagaatgcatgtaacgtgtttgatgaaatgcatgtcaggaatttgtt |
4133408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 8423708 - 8423761
Alignment:
| Q |
44 |
gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt |
97 |
Q |
| |
|
|||||| ||||||||| |||| |||||||||| |||||||||||||||||||| |
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| T |
8423708 |
gtgtttcgagaatgcatgtaaagtgtttgatgaaatgcatgtgaggaatttgtt |
8423761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 47 - 128
Target Start/End: Complemental strand, 36085884 - 36085803
Alignment:
| Q |
47 |
tttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttgatctcctatgactggtgcttgttca |
128 |
Q |
| |
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||||||||| |||| ||| |||||||||| ||| ||||| ||||||||||||||| ||| |||||| |||| |||||||| |
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| T |
36085884 |
tttggagaaggcacataaagtgtttgatgaaatgattgtgatgaatttgtttacttggtctgctatgattggttcttgttca |
36085803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 30193802 - 30193846
Alignment:
| Q |
83 |
tgtgaggaatttgtttacttgatctcctatgactggtgcttgttc |
127 |
Q |
| |
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||||||||||||||||||||| ||| |||||| ||||| |||||| |
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| T |
30193802 |
tgtgaggaatttgtttacttggtctgctatgattggtggttgttc |
30193846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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