View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4310_low_5 (Length: 377)

Name: NF4310_low_5
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4310_low_5
NF4310_low_5
[»] chr1 (1 HSPs)
chr1 (17-377)||(52795617-52795975)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 52795975 - 52795617
Alignment:
Q  17 ataatatttacccaaaaaatgattttttatactctaaaatatgtgcatactttgcacaatttaaccaaacctcaattatcttatcaatcaatgttgatta 116  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  52795975 ataatatttacccaaaaaatgtttttttatactctaaaatatgtgcatactttgcaaaatttaaccaaacctcaattatcttatcaatca-tgttgatta 52795877  T
Q  117 catggatcaattgctgtcaacatatactgaaataagtaacattaatgatgaaaaaatgaagttactctctaattcatttgtcacaaaattttatgaagtt 216  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52795876 catggatcagttgctgtcaacatatactgaaataagtaacattaatgatgaaaaaatgaagttactctctgattcatttgtcacaaaattttatgaagtt 52795777  T
Q  217 ttctctcactaatgtaannnnnnnnagtatgaatcatatatannnnnnnaaatagatgtcaatatctatctctacaaataaagatggtataaatttttct 316  Q
    |||||||||||||||||        ||||||||||||||||        |||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  52795776 ttctctcactaatgtaattttttttagtatgaatcatatat-tttttttaaatagatgtcaatatcggtctctacaaataaagatggtacaaatttttct 52795678  T
Q  317 tatttccgtctctctttacctttaatattcagggacattgattgaacatctaaaatttgac 377  Q
    ||||||||||||| |||||||||||||||| || ||||||| |||||||||||||||||||    
T  52795677 tatttccgtctctttttacctttaatattcgggaacattgactgaacatctaaaatttgac 52795617  T

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