View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310_low_6 (Length: 316)
Name: NF4310_low_6
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 41864886 - 41864597
Alignment:
| Q |
18 |
tccataacagctgttacaatgaccatgaaaagcactgcaaagaagatgccatgccacgtggagagtagtttagtccgctgaaagaattttactagaagaa |
117 |
Q |
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| T |
41864886 |
tccataacagctgttacaatgaccataaaaagcactgcaaagaagatgccatgccacgtggagagtagtttagtccactgaaagaattttactagaagaa |
41864787 |
T |
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| Q |
118 |
agcaaaggaaacttgaccaacaagccataacctgcagtagttcaattgaaatgaaaatttattatgaatagaacgattg---ttaaatagataacgaata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41864786 |
agcaaaggaaacttgaccaacaagccataacctgcagtagttcaattgaaatgaaaatttattatgaatagaacgattgttattaaatagataacgaata |
41864687 |
T |
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| Q |
215 |
aagtgattataaataataagtttaatctatctatcataatccaactcaaaacttacaaatattgatctttttggtcgacggaattgatga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41864686 |
aagtgattataaataataagtttaatctatctatcataatccaactcaaaacttacaaatattgatctttttggtcgacggaattgatga |
41864597 |
T |
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