View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4310_low_9 (Length: 252)
Name: NF4310_low_9
Description: NF4310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4310_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 8295230 - 8295409
Alignment:
| Q |
1 |
ggaataaaaagttaattaagggaaatagcatctactttgtgattacgtatacccacactaagattttagcatcattgatgttctttgtaatatgttatta |
100 |
Q |
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| T |
8295230 |
ggaataaaaagttaattaagggaaatagcacctactttgtgattacgtatacccacactaagattttagcatcattgatgttctttgtaatatgttatta |
8295329 |
T |
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| Q |
101 |
gtaaaaaattctgcacacttggcagattggtgtagataatttttacattttggattattttagcatcaaccaaaacttag |
180 |
Q |
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| T |
8295330 |
gtaaaaaattctgcacacttggcagattagtgtagataatttttacattttggattattttagcatcaaccaaaacttag |
8295409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 40 - 180
Target Start/End: Complemental strand, 18281390 - 18281249
Alignment:
| Q |
40 |
tgattacgtatacccacactaagattttagcatcattgatgtt---ctttgtaatatgttattagtaaaaaattctgcacacttggcagattggtgtaga |
136 |
Q |
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| T |
18281390 |
tgattacgtatacacacactaagattttagcatcattgatgtaatactttgtaatctgttattagtataaaattctgcacacttggcagattagtgtaga |
18281291 |
T |
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| Q |
137 |
taatttttacattttggattattttagcatcaaccaaaacttag |
180 |
Q |
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| T |
18281290 |
taa--tttacattttggatttttttaccatcaaccaaaccttag |
18281249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 179
Target Start/End: Original strand, 1144489 - 1144633
Alignment:
| Q |
36 |
tttgtgattacgtatacccacactaagattttagcatcattgatgttctttgtaatatgttattagtaaaaaattctgcacacttggcagattggtgt-a |
134 |
Q |
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| T |
1144489 |
tttgtgattacgtatgcccacattaagattgtagcatcattgatgtactttgtaatctgttattagtaataaattttgcacacttgacagattagtgtaa |
1144588 |
T |
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| Q |
135 |
gataatttttacattttggattattttagcatcaaccaaaactta |
179 |
Q |
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| T |
1144589 |
tataatctttacattttgcattattttagcatcaaccaaaactta |
1144633 |
T |
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