View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4311_high_4 (Length: 250)
Name: NF4311_high_4
Description: NF4311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4311_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 29083775 - 29084021
Alignment:
| Q |
8 |
tagcaaaggcaaagaattgcttctaagttaggctctatccacaata----aaatagcaaacccataaagtt-aatcttgcggctaagaatttcatcaaag |
102 |
Q |
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| T |
29083775 |
tagcaaaggcaaagaattgcttctaagttaggct--atccacaatataagaaatacttaacccataaagtttaatcttgcggctaagaatttcatcaaag |
29083872 |
T |
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| Q |
103 |
caaagtaacgttttggttttttaataccaaagaaactcataactcatcattgctcacaaatactttatattacaaatatgagaagcattatatatccatt |
202 |
Q |
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| T |
29083873 |
taaagtaacgttttggttttttaataccaaagaaactcataattcatcattgctcacaaatagtttatattacaaatatgagaagcattatatatccatt |
29083972 |
T |
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| Q |
203 |
atttctacatcaccatttatcaatattttc-atttcttccccaaaggac |
250 |
Q |
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| T |
29083973 |
atttctacatcaccatttatcaatattttctatttcttccccaaaggac |
29084021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 29091102 - 29091343
Alignment:
| Q |
12 |
aaaggcaaagaattgcttctaagttaggctctatccacaataaaa----tagcaaacccataaagttaatcttgcggctaagaatttcatcaaagcaaag |
107 |
Q |
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| T |
29091102 |
aaaggcaaagaattgcttctaagttaggct--atccacaataaaagaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaag |
29091199 |
T |
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| Q |
108 |
taacgttttggttttttaataccaaagaaactcataactcatcattgctcacaaatactttatattacaaatatgagaagcattatatatccattatttc |
207 |
Q |
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| T |
29091200 |
taacgttttggttttttaataccaaagaaactcataattcatcataagacaaaactactctatattacaaatatgagaaacattatatatgcattatttc |
29091299 |
T |
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| Q |
208 |
tacatcaccatttatcaatattttc-atttcttccccaaaggac |
250 |
Q |
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| T |
29091300 |
tacatcacatattatcaattctttctatttctttcccaaaggac |
29091343 |
T |
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