View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4311_high_5 (Length: 248)
Name: NF4311_high_5
Description: NF4311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4311_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 44627872 - 44627639
Alignment:
| Q |
1 |
ccaactccaagaacctagaaatgatgaaaaatttggagaatgaatccaagaagaaacaagaactagtgcagttaatgctagtgccaagaagagagccaaa |
100 |
Q |
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| T |
44627872 |
ccaactccaagaacctagaaatgatgaaaaatttggagaatgaatccaagaagaaacaagaactagtgcagttaatgctagtgccaagaagagagccaaa |
44627773 |
T |
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| Q |
101 |
aattgagaagaacaagtggaagaagctttcatcttaataaaagtactcctatcttgattgattatactgctttgaattcaatgtgatgaagttggtgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627772 |
aattgagaagaacaagtggaagaagctttcatcttaataaaagtactcctatcttgattgattatactgctttgaattcaatgtgatgaagttggtgttc |
44627673 |
T |
|
| Q |
201 |
aagaaagaattaaaatgggtgtgtatgtgtgtgt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44627672 |
aagaaagaattaaaatgggtgtgtatgtgtgtgt |
44627639 |
T |
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