View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4311_high_6 (Length: 226)
Name: NF4311_high_6
Description: NF4311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4311_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 11034441 - 11034634
Alignment:
| Q |
13 |
acagagaggctggttatattgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatc |
112 |
Q |
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| T |
11034441 |
acagtgagcctggttattttgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaacatc |
11034540 |
T |
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| Q |
113 |
tcacgacggatatccgcgcaagaaannnnnnnnnnnnnnnnnngatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatac |
209 |
Q |
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| T |
11034541 |
tcacgacggatatccgcgcaagaaa---tgttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatac |
11034634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 10921628 - 10921684
Alignment:
| Q |
67 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggat |
123 |
Q |
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| T |
10921628 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggat |
10921684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 11000444 - 11000378
Alignment:
| Q |
67 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaa |
133 |
Q |
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| T |
11000444 |
tttacaaaggctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaa |
11000378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 11003424 - 11003354
Alignment:
| Q |
67 |
tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaa |
137 |
Q |
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| T |
11003424 |
tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaa |
11003354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 11009103 - 11009139
Alignment:
| Q |
76 |
actgttgagccaagaaagttcaaatccataaaacatc |
112 |
Q |
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| T |
11009103 |
actgttgagccaagaaagttcaaatccataatacatc |
11009139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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