View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4311_low_1 (Length: 581)

Name: NF4311_low_1
Description: NF4311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4311_low_1
NF4311_low_1
[»] chr7 (24 HSPs)
chr7 (236-572)||(44241859-44242195)
chr7 (8-227)||(47130853-47131072)
chr7 (236-288)||(44151498-44151550)
chr7 (236-285)||(12792519-12792568)
chr7 (235-288)||(24363619-24363672)
chr7 (244-288)||(3559043-3559087)
chr7 (236-288)||(12792642-12792694)
chr7 (250-289)||(5017957-5017996)
chr7 (245-288)||(12792581-12792624)
chr7 (243-289)||(15321801-15321847)
chr7 (235-281)||(40439053-40439099)
chr7 (238-284)||(48917368-48917414)
chr7 (235-288)||(14696407-14696459)
chr7 (236-288)||(28727781-28727831)
chr7 (236-288)||(3610758-3610810)
chr7 (236-288)||(4966156-4966208)
chr7 (236-288)||(20881654-20881706)
chr7 (236-280)||(27481320-27481364)
chr7 (236-284)||(27548263-27548311)
chr7 (236-280)||(33346807-33346851)
chr7 (236-288)||(33353835-33353887)
chr7 (236-288)||(36484053-36484105)
chr7 (236-284)||(46104589-46104637)
chr7 (236-272)||(48470044-48470080)
[»] chr6 (15 HSPs)
chr6 (235-289)||(25100042-25100096)
chr6 (236-297)||(33067158-33067219)
chr6 (209-288)||(2735042-2735121)
chr6 (238-288)||(10476140-10476189)
chr6 (238-288)||(20351150-20351200)
chr6 (209-289)||(29296312-29296390)
chr6 (242-286)||(2205610-2205654)
chr6 (236-283)||(31812036-31812083)
chr6 (238-288)||(4420645-4420695)
chr6 (235-288)||(5564146-5564199)
chr6 (235-288)||(26694877-26694930)
chr6 (243-288)||(27894053-27894098)
chr6 (235-288)||(33787763-33787816)
chr6 (245-289)||(2455819-2455863)
chr6 (244-288)||(30863254-30863298)
[»] chr2 (24 HSPs)
chr2 (235-289)||(43985020-43985074)
chr2 (235-288)||(6988114-6988167)
chr2 (245-289)||(1056370-1056414)
chr2 (236-283)||(15780077-15780124)
chr2 (237-288)||(7871644-7871695)
chr2 (227-298)||(42419988-42420059)
chr2 (210-288)||(1810639-1810716)
chr2 (235-289)||(10563575-10563629)
chr2 (236-298)||(29628751-29628813)
chr2 (243-289)||(36852479-36852525)
chr2 (239-297)||(43065459-43065517)
chr2 (209-262)||(1625873-1625926)
chr2 (236-289)||(9174815-9174868)
chr2 (236-289)||(11513898-11513951)
chr2 (235-288)||(14299649-14299702)
chr2 (243-288)||(32821816-32821861)
chr2 (243-288)||(35379034-35379079)
chr2 (236-289)||(40837452-40837505)
chr2 (235-264)||(44590033-44590062)
chr2 (236-288)||(3235402-3235454)
chr2 (236-288)||(16867739-16867791)
chr2 (236-288)||(29316793-29316845)
chr2 (236-288)||(35485917-35485969)
chr2 (236-288)||(43635119-43635171)
[»] chr4 (23 HSPs)
chr4 (236-288)||(24370971-24371023)
chr4 (243-288)||(23819096-23819141)
chr4 (236-288)||(47800623-47800675)
chr4 (235-288)||(11158375-11158428)
chr4 (236-288)||(49219139-49219191)
chr4 (235-283)||(52735121-52735169)
chr4 (209-288)||(17884041-17884120)
chr4 (237-288)||(29263371-29263422)
chr4 (209-272)||(56480321-56480384)
chr4 (205-287)||(38346005-38346087)
chr4 (235-288)||(2996572-2996625)
chr4 (239-288)||(4798584-4798633)
chr4 (239-280)||(11698962-11699003)
chr4 (243-288)||(14011241-14011286)
chr4 (243-288)||(18628561-18628606)
chr4 (238-283)||(29778797-29778842)
chr4 (239-288)||(29912951-29913000)
chr4 (243-288)||(53673676-53673721)
chr4 (236-281)||(56007679-56007724)
chr4 (236-264)||(2111092-2111120)
chr4 (236-288)||(16494823-16494875)
chr4 (236-288)||(17822883-17822935)
chr4 (236-288)||(30207589-30207641)
[»] chr1 (32 HSPs)
chr1 (236-288)||(37842373-37842425)
chr1 (242-288)||(5150943-5150989)
chr1 (238-288)||(43332486-43332536)
chr1 (209-286)||(4576778-4576855)
chr1 (221-298)||(7137006-7137083)
chr1 (215-288)||(7472290-7472363)
chr1 (243-288)||(23373330-23373375)
chr1 (236-288)||(12564517-12564569)
chr1 (236-288)||(26779943-26779995)
chr1 (236-288)||(34290236-34290288)
chr1 (236-288)||(39347985-39348037)
chr1 (236-288)||(44251536-44251588)
chr1 (245-288)||(5047155-5047198)
chr1 (237-288)||(32182272-32182323)
chr1 (238-288)||(30257685-30257735)
chr1 (235-289)||(46504235-46504289)
chr1 (236-289)||(15515541-15515594)
chr1 (236-289)||(25005814-25005867)
chr1 (136-177)||(38578421-38578462)
chr1 (235-288)||(44940340-44940393)
chr1 (236-288)||(219569-219621)
chr1 (236-288)||(6231834-6231886)
chr1 (236-288)||(7262536-7262588)
chr1 (236-288)||(8130436-8130488)
chr1 (236-288)||(11893611-11893662)
chr1 (236-288)||(12564892-12564944)
chr1 (236-288)||(23902085-23902137)
chr1 (236-288)||(25479581-25479633)
chr1 (236-288)||(29007734-29007786)
chr1 (245-289)||(29385628-29385672)
chr1 (236-288)||(35590910-35590962)
chr1 (238-298)||(40943385-40943445)
[»] chr5 (20 HSPs)
chr5 (238-288)||(40205092-40205142)
chr5 (243-288)||(18906349-18906394)
chr5 (236-288)||(17368676-17368728)
chr5 (236-288)||(18543215-18543266)
chr5 (242-288)||(12242728-12242774)
chr5 (246-288)||(20028508-20028550)
chr5 (236-290)||(32172653-32172707)
chr5 (242-288)||(37611233-37611279)
chr5 (242-288)||(37787963-37788009)
chr5 (235-288)||(29659350-29659403)
chr5 (236-280)||(34205239-34205284)
chr5 (236-297)||(34975364-34975425)
chr5 (236-288)||(5284466-5284518)
chr5 (236-288)||(5951986-5952038)
chr5 (236-288)||(10272449-10272501)
chr5 (236-288)||(11707055-11707107)
chr5 (236-288)||(15074767-15074819)
chr5 (236-288)||(32703294-32703346)
chr5 (236-288)||(33533557-33533609)
chr5 (236-288)||(37588378-37588430)
[»] chr3 (19 HSPs)
chr3 (210-288)||(40665403-40665481)
chr3 (209-288)||(21367640-21367719)
chr3 (246-288)||(23793594-23793636)
chr3 (243-289)||(44284097-44284143)
chr3 (239-288)||(27792875-27792924)
chr3 (236-288)||(36887504-36887556)
chr3 (238-285)||(13413932-13413979)
chr3 (236-289)||(33965505-33965559)
chr3 (238-288)||(54837052-54837102)
chr3 (236-288)||(2318644-2318697)
chr3 (236-289)||(31723162-31723215)
chr3 (236-285)||(47904084-47904133)
chr3 (236-288)||(1816583-1816635)
chr3 (238-298)||(2825149-2825209)
chr3 (236-288)||(14548739-14548791)
chr3 (236-288)||(20502086-20502138)
chr3 (236-288)||(20669172-20669224)
chr3 (236-288)||(25776117-25776169)
chr3 (236-288)||(44295529-44295581)
[»] chr8 (23 HSPs)
chr8 (239-288)||(4762512-4762561)
chr8 (236-288)||(7918791-7918843)
chr8 (236-288)||(39561559-39561611)
chr8 (233-288)||(11813123-11813178)
chr8 (242-284)||(33553246-33553288)
chr8 (233-298)||(5069694-5069759)
chr8 (236-289)||(27028831-27028884)
chr8 (236-288)||(7645978-7646030)
chr8 (245-287)||(11494155-11494197)
chr8 (236-288)||(2482865-2482915)
chr8 (236-289)||(6509320-6509373)
chr8 (235-288)||(6864477-6864530)
chr8 (235-288)||(9956832-9956885)
chr8 (205-298)||(29168065-29168158)
chr8 (236-281)||(40014915-40014959)
chr8 (236-284)||(1640373-1640421)
chr8 (236-288)||(2093279-2093331)
chr8 (236-288)||(8062329-8062381)
chr8 (236-288)||(28769357-28769409)
chr8 (236-272)||(31891891-31891927)
chr8 (236-288)||(33714254-33714306)
chr8 (148-184)||(36963484-36963520)
chr8 (236-288)||(43504751-43504803)
[»] scaffold0167 (1 HSPs)
scaffold0167 (236-283)||(17276-17323)
[»] scaffold0020 (1 HSPs)
scaffold0020 (235-288)||(159991-160044)
[»] scaffold0019 (1 HSPs)
scaffold0019 (148-207)||(104239-104299)


Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 236 - 572
Target Start/End: Original strand, 44241859 - 44242195
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatgacgatatgaataggacataagctatttacatacgctat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44241859 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatgacgatatgaataggacataagctgtttacatacgctat 44241958  T
Q  336 cgcaaacaatcttacaaaggtttatgtcactggataagcttaattaaataaactaattcaaacagccctttgtttgcaaccggaatatttctcatactct 435  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44241959 cgcaaacaatcttaaaaaggtttatgtcactggataagcttaattaaataaactaattcaaacagtcctttgtttgcaaccggaatatttctcatactct 44242058  T
Q  436 gccactttcagtaatctgcatatactaatggatgggaatgcatttgcagggtatacctgactgggaccaaatcgcaaaggagcttccaccaatggaagca 535  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44242059 gccactttcagtaatctgcatatactaatagatgggaatgcatttgcagggtatacctgactgggaccaaatcgcaaaggagcttccaccaatggaagca 44242158  T
Q  536 attttaagcaggctggaaagatgacaagtagtattat 572  Q
    |||||||||| ||||||||||||||||||||||||||    
T  44242159 attttaagcaagctggaaagatgacaagtagtattat 44242195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 47131072 - 47130853
Alignment:
Q  8 ccaagaatataaggaattagatgatttaactgtaagtaaaatatggttatcaagcccaaaagcagaactccaaattcaacgctgttaagttaattgatca 107  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47131072 ccaataatataaggaattagatgatttaactggaagtaaaatatggttatcaagcccaaaagcagaactccaaattcaacgctgttaagttaattgatca 47130973  T
Q  108 ctagatagatccagtctagttacgacccagcttgatttatagcttataacataagcgcttatcatgataaacgcttaatacaagtcatttctataacaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47130972 ctagatagatccagtctagttacgacccagcttgatttatagcttataacataagcgcttatcatgataaacgcttaatacaagtcatttctataacaaa 47130873  T
Q  208 gataaaattaaattatttat 227  Q
    ||||||||||||||||||||    
T  47130872 gataaaattaaattatttat 47130853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 44151550 - 44151498
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  44151550 tataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaa 44151498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 12792568 - 12792519
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctga 285  Q
    |||||| | |||||||||||||||||||| ||||||| ||||||||||||    
T  12792568 tataagctattttcataagctatcttgaagagcttattgaaataagctga 12792519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 24363672 - 24363619
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||| || | || |||| |||||||||||||||    
T  24363672 ttataagttgttttcataagctatcctggagaggttatggaaataagctgaaaa 24363619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 3559043 - 3559087
Alignment:
Q  244 gttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||| | |||||||| |||||||||||||||||||||||||    
T  3559043 gttttcattaactatcttgtatagcttatagaaataagctgaaaa 3559087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 12792694 - 12792642
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| | |||||||||||||||||||| ||| ||| |||||||||||||||    
T  12792694 tataagctattttcataagctatcttgaagagcatatggaaataagctgaaaa 12792642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 5017996 - 5017957
Alignment:
Q  250 ataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  5017996 ataagctatcttgaaaagcttatggaaataagctgaaaat 5017957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 12792624 - 12792581
Alignment:
Q  245 ttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||| |||||||  ||||||||||||||    
T  12792624 ttttcataagctatcttgaagagcttatgaaaataagctgaaaa 12792581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 15321847 - 15321801
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  15321847 tgttttcataagctatcctgaaaagcttatggaaataagctcaaaat 15321801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 40439053 - 40439099
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataag 281  Q
    ||||||||||||||||| ||||||| |||| ||||||| ||||||||    
T  40439053 ttataagttgttttcattagctatcctgaagagcttatggaaataag 40439099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 48917414 - 48917368
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctg 284  Q
    ||||||||||||||||||||||||| | |||||||  ||||||||||    
T  48917414 taagttgttttcataagctatcttggagagcttatgaaaataagctg 48917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 14696459 - 14696407
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| ||| | | ||||| |||||||||||||||    
T  14696459 ttataagttgttttcataagctatgttggacaacttat-gaaataagctgaaaa 14696407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 28727831 - 28727781
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||| |||||||  || |||||||||||||||||||||    
T  28727831 tataagatgttttcataagttatcttg--taacttatagaaataagctgaaaa 28727781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 3610810 - 3610758
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||| ||| ||||| |  | |||||||||||||||||||||||    
T  3610810 tataagttgttttcgtaaactatcctagagagcttatagaaataagctgaaaa 3610758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 4966156 - 4966208
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||||||||||| ||| |||| ||||||| ||||||| |||||||    
T  4966156 tataagctgttttcataagccatcctgaagagcttatggaaataaactgaaaa 4966208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 20881706 - 20881654
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||| ||||||| || | |||||  ||||||||||||||    
T  20881706 tataagttgttttcataaactatcttaaagaacttatgaaaataagctgaaaa 20881654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 27481364 - 27481320
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataa 280  Q
    |||||||| ||||||||||||||| || ||||||||| |||||||    
T  27481364 tataagttattttcataagctatcatggatagcttatggaaataa 27481320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 27548263 - 27548311
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctg 284  Q
    |||||| |||||||||||||||||||| ||| ||||| || ||||||||    
T  27548263 tataagctgttttcataagctatcttggataacttatggagataagctg 27548311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 33346807 - 33346851
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataa 280  Q
    ||||||||| | ||||||||||||||| | |||||||||||||||    
T  33346807 tataagttgatctcataagctatcttggagagcttatagaaataa 33346851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 33353835 - 33353887
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||| | ||||||||||||||| | | ||||||||||||||| |||||    
T  33353835 tataagttgatctcataagctatcttggagaacttatagaaataagccgaaaa 33353887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 36484105 - 36484053
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||| ||| |||| |||| |||||||||||||| | ||||||    
T  36484105 tataagttgttttcacaagttatcctgaagagcttatagaaatatgttgaaaa 36484053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 46104637 - 46104589
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctg 284  Q
    |||||||||||||||||||||||  |||| |||||||  ||||||||||    
T  46104637 tataagttgttttcataagctatgctgaagagcttatgaaaataagctg 46104589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 48470044 - 48470080
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttat 272  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  48470044 tataagttgttttcataagctattttgaataacttat 48470080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 25100042 - 25100096
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  25100042 ttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaat 25100096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 33067158 - 33067219
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatg 297  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||| ||||||| ||||||||    
T  33067158 tataagttgttttcataagctatcttggagagcttgtagaaataaactgaaaacgatttatg 33067219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 2735042 - 2735121
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||| ||||||||||| ||||| || |||||| ||||||||||||| |||||||| | |||||  |||||||| |||||    
T  2735042 ataaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaa 2735121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 10476189 - 10476140
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  10476189 taagttgttttcataagctatcttggagagc-tatagaaataagctgaaaa 10476140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 20351150 - 20351200
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| |||||||||||||||||| | |||||||||| ||||||||||||||    
T  20351150 taagatgttttcataagctatctcggatagcttataaaaataagctgaaaa 20351200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 29296390 - 29296312
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||| ||||||||||| ||||| |  |||||||||||||| |||||| ||||  |||||||||  |||||||||||||||    
T  29296390 ataaagttaaattatttttgtataaggtataagttgttttcttaagctctctt--atagcttatgaaaataagctgaaaat 29296312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 2205654 - 2205610
Alignment:
Q  242 ttgttttcataagctatcttgaatagcttatagaaataagctgaa 286  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||    
T  2205654 ttgttttcataagctatcttggagagcttatggaaataagctgaa 2205610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 31812083 - 31812036
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagct 283  Q
    ||||||||||||||||||||||||||| | |||||||  |||||||||    
T  31812083 tataagttgttttcataagctatcttggagagcttatgaaaataagct 31812036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 4420645 - 4420695
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||| |||||||||||| | ||||||| |||||||||||||||    
T  4420645 taagttattttcctaagctatcttggagagcttatggaaataagctgaaaa 4420695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 5564199 - 5564146
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| ||||||||||||||||| ||||||| || ||||  ||||||||||||||    
T  5564199 ttatcagttgttttcataagctgtcttgaagagtttatgcaaataagctgaaaa 5564146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 26694877 - 26694930
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||| |||||||||| | |||||  ||||||||||||||    
T  26694877 ttataaattgttttcataaactatcttgaagaacttatgaaaataagctgaaaa 26694930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 27894053 - 27894098
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||    
T  27894053 tgttttcataagatatcttgaaaagcttatgaaaataagctgaaaa 27894098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 33787816 - 33787763
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||| |||||||||||| ||||||| | ||||||| |||||| ||||||||    
T  33787816 ttataagctgttttcataagttatcttggagagcttatggaaataggctgaaaa 33787763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 2455819 - 2455863
Alignment:
Q  245 ttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||||||| | ||||||| |||||||| |||||||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaat 2455863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 30863254 - 30863298
Alignment:
Q  244 gttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||| |||| |||||| ||||||||||| |||||||||||    
T  30863254 gttttcataggctagcttgaagagcttatagaagtaagctgaaaa 30863298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 43985074 - 43985020
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  43985074 ttataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaat 43985020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 6988114 - 6988167
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  6988114 ttataagttgttttcataagctatcttgaagagtttatagaaataagatgaaaa 6988167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 1056414 - 1056370
Alignment:
Q  245 ttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  1056414 ttttcataagctatcttgaagagtttatagaaataagctgaaaat 1056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 15780077 - 15780124
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagct 283  Q
    |||||||||||||||||||||||| || | ||||||||||||||||||    
T  15780077 tataagttgttttcataagctatcgtgcagagcttatagaaataagct 15780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 7871644 - 7871695
Alignment:
Q  237 ataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||| |||||||||||||| | ||||| ||||||| |||||||||||||||    
T  7871644 ataagctgttttcataagctcttttgaagagcttatggaaataagctgaaaa 7871695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 42419988 - 42420059
Alignment:
Q  227 tgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    ||||| || |||||| | ||||||||||||||| || ||||||||| ||||| |||||||||  ||||||||    
T  42419988 tgtataatctataagctattttcataagctatcctggatagcttatggaaatgagctgaaaacaatttatga 42420059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 1810639 - 1810716
Alignment:
Q  210 taaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| ||||||| ||| ||||| | ||||| |||||||| ||||||||||||||| || ||||  ||||||||||||||    
T  1810639 taaatttaaattgtttttgtataagttata-gttgtttttataagctatcttgaagagtttatgaaaataagctgaaaa 1810716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 10563629 - 10563575
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||||||||||||||  |||| ||||||   |||||||||||||||    
T  10563629 ttataagttgttttcataagctatgctgaagagcttaagaaaataagctgaaaat 10563575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 29628813 - 29628751
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    ||||||||||| ||||||||||||||| | |  |||| |||||||||||||||  ||||||||    
T  29628813 tataagttgttctcataagctatcttggaaaatttatggaaataagctgaaaacaatttatga 29628751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 36852479 - 36852525
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||||||    
T  36852479 tgttttcataagctatcttggagagcttatggaaataatctgaaaat 36852525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 43065517 - 43065459
Alignment:
Q  239 aagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatg 297  Q
    |||||||||||||||| |||| || | ||||||| |||||||||||||||  |||||||    
T  43065517 aagttgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatg 43065459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 1625873 - 1625926
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttg 262  Q
    ||||| ||||||| |||  |||| | ||||||||||||||||||||||||||||    
T  1625873 ataaagttaaattgttttcgtataagttataagttgttttcataagctatcttg 1625926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 9174815 - 9174868
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||| |||||||||||||||||||  | |||||||  |||||||||||||||    
T  9174815 tataagctgttttcataagctatcttacagagcttatgaaaataagctgaaaat 9174868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 11513898 - 11513951
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||||||||||||| || | | ||| | ||||||||||||||||    
T  11513898 tataagttgttttcataagctatcatggagaacttttggaaataagctgaaaat 11513951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 14299702 - 14299649
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| ||||||||||| | ||||||||  | |||||||||||||||||||||||    
T  14299702 ttatgagttgttttcacaggctatctttgacagcttatagaaataagctgaaaa 14299649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 32821816 - 32821861
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||| | || ||||||||||||||| |||||||    
T  32821816 tgttttcataagctatcctaaagagcttatagaaataaactgaaaa 32821861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 35379079 - 35379034
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||| | |||||||  ||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaa 35379034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 40837505 - 40837452
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||| |||||||| |||||||||| || | ||||||| ||||||||||||||||    
T  40837505 tatatgttgttttaataagctatcatgtagagcttatggaaataagctgaaaat 40837452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 44590033 - 44590062
Alignment:
Q  235 ttataagttgttttcataagctatcttgaa 264  Q
    ||||||||||||||||||||||||||||||    
T  44590033 ttataagttgttttcataagctatcttgaa 44590062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 3235454 - 3235402
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||||||||  |||||||||| || |||| |||||||||||||||    
T  3235454 tataagctgttttcatatactatcttgaaaagtttatggaaataagctgaaaa 3235402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 16867739 - 16867791
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||| ||||||||||| | ||||||| |||||||| ||||||    
T  16867739 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaa 16867791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 29316845 - 29316793
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||||||| |||||||||| | | ||||| |||||||||||||||    
T  29316845 tataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaa 29316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 35485917 - 35485969
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||| |||||||||| |||| ||| ||| ||||| |||||||||    
T  35485917 tataagttgtttttataagctatcctgaagagcctatggaaatgagctgaaaa 35485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 43635171 - 43635119
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||| |||||||||||| |||| |||||||  ||||||||| ||||    
T  43635171 tataagttgttctcataagctatcatgaaaagcttatgaaaataagcttaaaa 43635119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 24371023 - 24370971
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  24371023 tataagttgttttcataagctatcctaaatagtttatagaaataagctgaaaa 24370971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 23819096 - 23819141
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||    
T  23819096 tgttttcataagctatcttgaagagcttatagaaataagatgaaaa 23819141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 47800623 - 47800675
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||||||||| |||||||  ||||||||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaa 47800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 11158428 - 11158375
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||||||  | ||||| | |||||||||||||||    
T  11158428 ttataagttgttttcataagctatcttagagagcttgtggaaataagctgaaaa 11158375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 49219139 - 49219191
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||| ||||||| || || |||| |||||||||||||||    
T  49219139 tataagttgttttcataaactatcttaaagagattatggaaataagctgaaaa 49219191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 52735121 - 52735169
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagct 283  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||||||||||    
T  52735121 ttatatgttgttttcgtaagctatcttgaagagcttatggaaataagct 52735169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 17884041 - 17884120
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||| ||||||| ||| ||||| | |||| ||||||||||||||||||| ||| | |||||||  |||| |||||||||    
T  17884041 ataaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttatgaaaattagctgaaaa 17884120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 29263371 - 29263422
Alignment:
Q  237 ataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||| || | ||||| | |||||||||||||||    
T  29263371 ataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaa 29263422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 56480321 - 56480384
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttat 272  Q
    ||||| ||||||| ||||||||| | ||||||| ||||||||||| |||||||| | |||||||    
T  56480321 ataaagttaaattgtttatgtataagttataagctgttttcataaactatcttggagagcttat 56480384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 38346087 - 38346005
Alignment:
Q  205 aaagataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaa 287  Q
    ||||||||| |||||||||||  |||| |  |||| | |||||||||| ||||||||| |||| ||||  |||||||||||||    
T  38346087 aaagataaatttaaattattttcgtataagatatatgatgttttcataggctatcttggataggttatgtaaataagctgaaa 38346005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 2996572 - 2996625
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||||||| | ||| |||  ||||||| ||||||    
T  2996572 ttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaa 2996625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 4798633 - 4798584
Alignment:
Q  239 aagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| | |||||||  ||||||||| ||||    
T  4798633 aagttgttttcataagctatcttggagagcttatgcaaataagctcaaaa 4798584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 11698962 - 11699003
Alignment:
Q  239 aagttgttttcataagctatcttgaatagcttatagaaataa 280  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  11698962 aagttgttttcataagctaccttgacaagcttatagaaataa 11699003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 14011241 - 14011286
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||| |||||||||||||| | ||||||| |||||||||||||||    
T  14011241 tgtttacataagctatcttggagagcttatggaaataagctgaaaa 14011286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 18628606 - 18628561
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||| ||||||| | ||||||| |||||||||||||||    
T  18628606 tgttttcataagttatcttggagagcttatggaaataagctgaaaa 18628561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 29778797 - 29778842
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagct 283  Q
    |||||||||||||||||||| |||||| |||||||  |||||||||    
T  29778797 taagttgttttcataagctaccttgaagagcttatgaaaataagct 29778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 29912951 - 29913000
Alignment:
Q  239 aagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| ||||||||||||||||||| | | |||||| ||||||||||||||    
T  29912951 aagtcgttttcataagctatcttggacaacttataaaaataagctgaaaa 29913000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 53673721 - 53673676
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||| | |||||||  ||||||||||||||    
T  53673721 tgttttcataagctatcttggagagcttatgtaaataagctgaaaa 53673676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 56007679 - 56007724
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataag 281  Q
    ||||||||||||| ||||| ||||||| | ||||||||||||||||    
T  56007679 tataagttgtttttataagttatcttggagagcttatagaaataag 56007724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 2111120 - 2111092
Alignment:
Q  236 tataagttgttttcataagctatcttgaa 264  Q
    |||||||||||||||||||||||||||||    
T  2111120 tataagttgttttcataagctatcttgaa 2111092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 16494875 - 16494823
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||| | ||||| || || |||| ||||||    
T  16494875 tataagttgttttcataagctatcttggagagcttgtaaaactaagttgaaaa 16494823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 17822935 - 17822883
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||| | | |||||  ||||||||| ||||    
T  17822935 tataagttgttttcataagctatcttggagaacttatgaaaataagctaaaaa 17822883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 30207641 - 30207589
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||| |||  | || |||| |||||||||||||||    
T  30207641 tataagttgttttcataagctaccttagagagattatggaaataagctgaaaa 30207589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 37842425 - 37842373
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  37842425 tataagttgttttcataagctatcttgaagaacttataaaaataagctgaaaa 37842373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 5150943 - 5150989
Alignment:
Q  242 ttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||    
T  5150943 ttgttttcataagctatcatgaagagcttatagaaataagttgaaaa 5150989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 43332486 - 43332536
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| |||||||||||||||||||||| |||||||  ||||||||||||||    
T  43332486 taagctgttttcataagctatcttgaagagcttattaaaataagctgaaaa 43332536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 4576778 - 4576855
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaa 286  Q
    ||||| ||||| ||||| ||||  | ||||||| |||||||||||||||| ||||||| |||||  ||||||||||||    
T  4576778 ataaagttaaaatatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaa 4576855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 7137083 - 7137006
Alignment:
Q  221 tatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    ||||| ||||| || |||||| |||||||||||||||||||| | | |||||  ||||||||||||||| | ||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatga 7137006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 7472290 - 7472363
Alignment:
Q  215 ttaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||| ||| ||||| || |||||| ||||| |||||||||||||| | |||||||  ||||||||||||||    
T  7472290 ttaaattgtttttgtataatctataagctgtttccataagctatcttggagagcttatgaaaataagctgaaaa 7472363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 23373375 - 23373330
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||    
T  23373375 tgttttcataagctatcctgaagagcttacagaaataagctgaaaa 23373330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 12564569 - 12564517
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| |||||||||||||||||||||| | | ||||| |||||||||||||||    
T  12564569 tataggttgttttcataagctatcttggagaacttatggaaataagctgaaaa 12564517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 26779995 - 26779943
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||||| | |||||  ||||||| ||||||    
T  26779995 tataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaa 26779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 34290236 - 34290288
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||||||||| | |||||  ||||||||||||||    
T  34290236 tataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaa 34290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 39348037 - 39347985
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||| ||||| || | ||||||| |||||||||||||||    
T  39348037 tataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaa 39347985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 44251536 - 44251588
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||| | | || || ||||||||||||||||||||    
T  44251536 tataagttgttttcataagctagcataaaaagattatagaaataagctgaaaa 44251588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 5047155 - 5047198
Alignment:
Q  245 ttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||    
T  5047155 ttttcataagctatcatgaagagcttatggaaataagctgaaaa 5047198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 32182272 - 32182323
Alignment:
Q  237 ataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||| || |||||||||| ||||||  |||||||||||||||    
T  32182272 ataagttgttttcaaaatctatcttgaagagcttaaggaaataagctgaaaa 32182323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 30257685 - 30257735
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||| ||||| || |  ||||||||||||||||||||||    
T  30257685 taagttgttttcataaactatcctggagggcttatagaaataagctgaaaa 30257735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 46504289 - 46504235
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||| ||||| ||||||||| || ||||||||||  |||||||||    
T  46504289 ttataagttgttttgataagttatcttgaagagtttatagaaattggctgaaaat 46504235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 15515541 - 15515594
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||  |||||||    
T  15515541 tataagttgttttcataagttatcatggatagcttatggaaataaattgaaaat 15515594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 25005867 - 25005814
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||||||||||||||||| || | |||||||| ||| ||||| |||||    
T  25005867 tataagttgttttcataagctatcctggagagcttataaaaacaagcttaaaat 25005814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 38578421 - 38578462
Alignment:
Q  136 agcttgatttatagcttataacataagcgcttatcatgataa 177  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  38578421 agcttaatttacagcttatagcataagcgcttatcatgataa 38578462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 44940340 - 44940393
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| ||||| |||| || || | |||||||||||||||    
T  44940340 ttataagttgttttcataatctatcctgaagaggttgtggaaataagctgaaaa 44940393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 219621 - 219569
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||| |||||||| || |||| ||||||| ||||| |||||||||    
T  219621 tataagttgtttacataagctgtcctgaagagcttatggaaatgagctgaaaa 219569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 6231886 - 6231834
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||||| ||||||| | |||| | |||||||||||||||||||||    
T  6231886 tataagctgttttcgtaagctaacctgaagaacttatagaaataagctgaaaa 6231834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 7262588 - 7262536
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||| ||||||||||||||| |||| ||||| | |||||||| ||||||    
T  7262588 tataagttcttttcataagctatcctgaagagcttgtggaaataaggtgaaaa 7262536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 8130436 - 8130488
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| || | | ||||| |||| ||||||||||    
T  8130436 tataagttgttttcataagctatcatggaaaacttatggaaacaagctgaaaa 8130488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 11893662 - 11893611
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||| |||||||||| ||||| || |||| |||||||||||||||    
T  11893662 tataagttgttt-cataagctattttgaagagtttatggaaataagctgaaaa 11893611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 12564944 - 12564892
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||  |  |||||  |||||||||||||||    
T  12564944 tataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaa 12564892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 23902137 - 23902085
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||| ||||||||||  | ||||||| ||| |||||||||||    
T  23902137 tataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaa 23902085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 25479581 - 25479633
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| |  | |||||||  ||||||||||||||    
T  25479581 tataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaa 25479633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 29007786 - 29007734
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||  ||||  ||||| ||||||| |||||||||||||||    
T  29007786 tataagttgttttcatcggctactttgaaaagcttatcgaaataagctgaaaa 29007734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 29385628 - 29385672
Alignment:
Q  245 ttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||||||| | ||||||||||||||| |||||| |||||||||    
T  29385628 ttttcataagttgtcttgaatagcttatggaaataggctgaaaat 29385672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 35590962 - 35590910
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||| | |||||||||||||| || | ||||||| |||||||||||||||    
T  35590962 tataagtcgatttcataagctatcatggagagcttatggaaataagctgaaaa 35590910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 40943445 - 40943385
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    ||||||||||| ||||||||| | ||| |||||||||||||||| || ||| | |||||||    
T  40943445 taagttgttttgataagctatttcgaagagcttatagaaataagttgtaaacggtttatga 40943385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 40205142 - 40205092
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||| || | |||||||||||||||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagctgaaaa 40205092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 18906349 - 18906394
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||    
T  18906349 tgttttcataagctatcttgaaaagcttatcgaaataagctgaaaa 18906394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 17368676 - 17368728
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||| | || |||| |||||||||||||||    
T  17368676 tataagttgttttcataagctatcttggagaggttatggaaataagctgaaaa 17368728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 18543266 - 18543215
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| || | ||||||| |||||||||||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttat-gaaataagctgaaaa 18543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 12242774 - 12242728
Alignment:
Q  242 ttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||| | ||||||| ||| |||||||||||    
T  12242774 ttgttttcataagctatcttggagagcttatggaagtaagctgaaaa 12242728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 20028550 - 20028508
Alignment:
Q  246 tttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||  |||| |||||||||||||||||||||||    
T  20028550 tttcataagctattatgaagagcttatagaaataagctgaaaa 20028508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 290
Target Start/End: Original strand, 32172653 - 32172707
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatg 290  Q
    |||||| ||||||||||||||||| |||| | || || |||||||||||||||||    
T  32172653 tataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatg 32172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 37611279 - 37611233
Alignment:
Q  242 ttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||| | ||||||| ||||||| |||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaa 37611233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 37788009 - 37787963
Alignment:
Q  242 ttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||| | ||||||| ||||||| |||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaa 37787963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 29659350 - 29659403
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||| ||||||  | || ||||| ||||||||||||||    
T  29659350 ttataagttgttttcataagttatcttagagagtttatataaataagctgaaaa 29659403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 34205239 - 34205284
Alignment:
Q  236 tataagttgttttcataagctatcttg-aatagcttatagaaataa 280  Q
    ||||||||||||||||||||||||||| || ||||||| |||||||    
T  34205239 tataagttgttttcataagctatcttgaaaaagcttatggaaataa 34205284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 34975364 - 34975425
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatg 297  Q
    ||||| |||||||| ||||||||| || | |||| || ||||||||||||||| ||||||||    
T  34975364 tataaattgttttcgtaagctatcctggagagctaatggaaataagctgaaaacgatttatg 34975425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 5284518 - 5284466
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||| |||||| |||| |||| ||  ||||||||||||||    
T  5284518 tataagttgttttcataggctatcatgaagagctaatgaaaataagctgaaaa 5284466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 5952038 - 5951986
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||| |||||||||||||  |||  |||||||||||| |||||||||||||||    
T  5952038 tatatgttgttttcataaattatactgaatagcttatggaaataagctgaaaa 5951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 10272501 - 10272449
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||| |||||| | || ||||  ||||||||||||||    
T  10272501 tataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaa 10272449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 11707055 - 11707107
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||||||| | ||||| |  ||||||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaa 11707107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 15074819 - 15074767
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| |||  || | ||||||| |||||||||||||||    
T  15074819 tataagttgttttcataagttatactggaaagcttatggaaataagctgaaaa 15074767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 32703346 - 32703294
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||| | | |  ||||| ||||||||||||||    
T  32703346 tataagttgttttcataagctatctaggagaatttataaaaataagctgaaaa 32703294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 33533609 - 33533557
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||| ||||||||||| | ||||||| |||||||| ||||||    
T  33533609 tataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaa 33533557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 37588430 - 37588378
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| |||  || | ||||||| |||||||||||||||    
T  37588430 tataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 37588378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 40665403 - 40665481
Alignment:
Q  210 taaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||||||| ||| | | ||||||| |||||||||||| ||||||| | |||||||| ||||||||||||||    
T  40665403 taaaataaaattatttttgtgtaagttataagatgttttcataagttatcttggagagcttataaaaataagctgaaaa 40665481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 288
Target Start/End: Original strand, 21367640 - 21367719
Alignment:
Q  209 ataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||| ||||||| |||  |||| || ||||||||||||||||||||||||||| | | |||||  ||||||||||||||    
T  21367640 ataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaa 21367719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 23793594 - 23793636
Alignment:
Q  246 tttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  23793594 tttcataagctatcttggaaagcttatagaaataagctgaaaa 23793636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 44284143 - 44284097
Alignment:
Q  243 tgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaat 44284097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 27792875 - 27792924
Alignment:
Q  239 aagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||| ||||| || | |||||||||||||||||||||||    
T  27792875 aagttgttttcataaactatcatgtagagcttatagaaataagctgaaaa 27792924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 36887504 - 36887556
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||| |||||||| | |||||  ||||||||||||||    
T  36887504 tataagttgttttcataagccatcttgaagaacttatgaaaataagctgaaaa 36887556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 13413932 - 13413979
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctga 285  Q
    |||| |||||||||||||||||||||| |||||||  |||||||||||    
T  13413932 taagctgttttcataagctatcttgaacagcttatcaaaataagctga 13413979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 33965559 - 33965505
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatag-aaataagctgaaaat 289  Q
    |||||| |||||||||||||||||||||| ||||||| | ||| |||||||||||    
T  33965559 tataagatgttttcataagctatcttgaagagcttatggaaaaaaagctgaaaat 33965505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 54837102 - 54837052
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||||| | |||||||| |||||||| |||||    
T  54837102 taagttattttcataagctatcttggacagcttataaaaataagcggaaaa 54837052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 2318644 - 2318697
Alignment:
Q  236 tataagttgttttcataagctat-cttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||| ||||| ||| |||| | |||||||||||||||||||||||    
T  2318644 tataagttgtttttataagttattcttggagagcttatagaaataagctgaaaa 2318697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 31723162 - 31723215
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    ||||||||||||| |||||||||| |||| || |||||| |||||| |||||||    
T  31723162 tataagttgttttaataagctatcatgaagagtttataggaataagatgaaaat 31723215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 47904133 - 47904084
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctga 285  Q
    ||||||| |||||||||||||||| |||| ||||||  ||||||||||||    
T  47904133 tataagtggttttcataagctatcgtgaagagcttacggaaataagctga 47904084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 1816583 - 1816635
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||  || | |||||||  ||||||||||||||    
T  1816583 tataagttgttttcataagctatactggagagcttatcaaaataagctgaaaa 1816635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 2825149 - 2825209
Alignment:
Q  238 taagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    |||||| |||||||||||||||||| | |||||||  ||||||||| |||||  |||||||    
T  2825149 taagttattttcataagctatcttggagagcttatgaaaataagcttaaaatactttatga 2825209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 14548791 - 14548739
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| |||  || | ||||||| |||||||||||||||    
T  14548791 tataagttgttttcataagttattctggagagcttatggaaataagctgaaaa 14548739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 20502138 - 20502086
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| ||||||||||||||||| |||| |||||||   |||||||||||||    
T  20502138 tataagctgttttcataagctatcctgaagagcttatgagaataagctgaaaa 20502086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 20669172 - 20669224
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||||||| | |||||||  |||||||| |||||    
T  20669172 tataagctgttttcataagctatcttggagagcttatgtaaataagcggaaaa 20669224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 25776117 - 25776169
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| | ||||||| | ||||| ||| |||||||||||    
T  25776117 tataagttgttttcataagttgtcttgaagaacttatggaagtaagctgaaaa 25776169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 44295529 - 44295581
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| ||| | | | ||||||| |||||||||||||||    
T  44295529 tataagttgttttcataagatatatcggagagcttatggaaataagctgaaaa 44295581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 4762512 - 4762561
Alignment:
Q  239 aagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  4762512 aagttgttttcataagctatcttgaagagcttatgtaaataagctgaaaa 4762561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 7918843 - 7918791
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||||||||||| | ||||| | |||||||||||||||    
T  7918843 tataagttgttttcataagctatcttgtagagcttgtggaaataagctgaaaa 7918791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 39561611 - 39561559
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||| ||||||||| |||| ||||||| |||||||||||||||    
T  39561611 tataagttgttttcgtaagctatcatgaaaagcttatggaaataagctgaaaa 39561559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 11813178 - 11813123
Alignment:
Q  233 atttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||  ||||||||||||||||||| || |||||| ||||||||||||||||    
T  11813178 atttataatctgttttcataagctatcttcaagagcttacagaaataagctgaaaa 11813123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 33553246 - 33553288
Alignment:
Q  242 ttgttttcataagctatcttgaatagcttatagaaataagctg 284  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  33553246 ttgttttcataagctatcttgaagagcttatggaaataagctg 33553288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 5069694 - 5069759
Alignment:
Q  233 atttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    ||||||||| |||||||||||| ||||||  | |||||||  ||||||||||||||||| ||||||    
T  5069694 atttataagctgttttcataagatatcttcgaaagcttatgaaaataagctgaaaatgacttatga 5069759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 27028831 - 27028884
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||| |||||||||||||||||||| | |||||||  |||||||||||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaat 27028884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 7645978 - 7646030
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||| | || | ||||||| |||||||||||||||    
T  7645978 tataagttgttttcataagctaacctgtaaagcttatggaaataagctgaaaa 7646030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 11494155 - 11494197
Alignment:
Q  245 ttttcataagctatcttgaatagcttatagaaataagctgaaa 287  Q
    |||||||||||||||||||| |||||||  |||||||||||||    
T  11494155 ttttcataagctatcttgaagagcttatgaaaataagctgaaa 11494197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 2482865 - 2482915
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||  ||||||||| ||| |||||||||||||||||||||    
T  2482865 tataagctgttttcat--gctatcttggataacttatagaaataagctgaaaa 2482915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 6509373 - 6509320
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaat 289  Q
    |||||| ||||||||||||||||| || | ||||||| |||||||| |||||||    
T  6509373 tataagctgttttcataagctatcctggagagcttattgaaataaggtgaaaat 6509320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 6864530 - 6864477
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||||||||||| ||| | |||||   |||||||||||||||    
T  6864530 ttataagttgttttcataagctattttggagagcttgaggaaataagctgaaaa 6864477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 9956885 - 9956832
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||||||||||||||| |||||||| | | |||||  ||||||||||||||    
T  9956885 ttataagttgttttcataatctatcttggagaacttatgaaaataagctgaaaa 9956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 29168158 - 29168065
Alignment:
Q  205 aaagataaaattaaattatttatgtattatttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaatgatttatga 298  Q
    ||||||||||| ||||||||| |||||    |||||| ||||||| | |||||||||| | | ||||| |||||||||||| ||  ||||||||    
T  29168158 aaagataaaataaaattatttttgtatatgctataagctgttttcctgagctatcttggagaacttatggaaataagctgagaaacatttatga 29168065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 40014959 - 40014915
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataag 281  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||||    
T  40014959 tataagatgttttcataagctatcttgaagagcttat-gaaataag 40014915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 1640421 - 1640373
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctg 284  Q
    |||||| |||||||||||||||| || || ||||||| |||||||||||    
T  1640421 tataagctgttttcataagctatatttaagagcttatggaaataagctg 1640373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 2093279 - 2093331
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||||||||||||| ||||||| ||||  | ||||||||||||||| ||||    
T  2093279 tataagttgttttcattagctatcctgaagcgtttatagaaataagctaaaaa 2093331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 8062329 - 8062381
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||||||  | || |||| |||||||||||||||    
T  8062329 tataagctgttttcataagctatcttagagagattatggaaataagctgaaaa 8062381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 28769409 - 28769357
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||||||||||||| ||| | || |||| |||||||||||||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaaaa 28769357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 31891891 - 31891927
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttat 272  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  31891891 tataagttgttttcataagctatattgaagagcttat 31891927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 33714306 - 33714254
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| | |||||||||||||||| | | |||||||| ||||||||||||||    
T  33714306 tataagctattttcataagctatctgggagagcttataaaaataagctgaaaa 33714254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 36963520 - 36963484
Alignment:
Q  148 agcttataacataagcgcttatcatgataaacgctta 184  Q
    |||||||| || |||||||||||||||||||||||||    
T  36963520 agcttatagcacaagcgcttatcatgataaacgctta 36963484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 43504751 - 43504803
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    |||||| |||||| ||||||||||||| | | ||||| |||||||||||||||    
T  43504751 tataagatgtttttataagctatcttggagaacttatggaaataagctgaaaa 43504803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 17276 - 17323
Alignment:
Q  236 tataagttgttttcataagctatcttgaatagcttatagaaataagct 283  Q
    ||||||||||||||||||||||||||| | | ||||||| ||||||||    
T  17276 tataagttgttttcataagctatcttggagaacttatagcaataagct 17323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 160044 - 159991
Alignment:
Q  235 ttataagttgttttcataagctatcttgaatagcttatagaaataagctgaaaa 288  Q
    ||||||| ||||||||||||||||| | || ||||| | |||||||||||||||    
T  160044 ttataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaa 159991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 104299 - 104239
Alignment:
Q  148 agcttataacataagcgcttatcatgataaacgctta-atacaagtcatttctataacaaa 207  Q
    ||||||||||||||||| ||  |||||||||||||||  || |||| ||||||||||||||    
T  104299 agcttataacataagcgttttacatgataaacgcttatgtataagttatttctataacaaa 104239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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