View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4311_low_5 (Length: 248)

Name: NF4311_low_5
Description: NF4311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4311_low_5
NF4311_low_5
[»] scaffold0214 (2 HSPs)
scaffold0214 (137-219)||(11810-11892)
scaffold0214 (136-203)||(11624-11691)
[»] chr6 (8 HSPs)
chr6 (138-226)||(33022164-33022252)
chr6 (139-215)||(33022355-33022431)
chr6 (138-215)||(21389021-21389098)
chr6 (139-216)||(7789856-7789933)
chr6 (150-216)||(7789679-7789744)
chr6 (141-216)||(21389208-21389282)
chr6 (139-195)||(28472568-28472624)
chr6 (139-195)||(29859757-29859813)
[»] chr5 (29 HSPs)
chr5 (138-226)||(26534506-26534594)
chr5 (136-226)||(8323705-8323795)
chr5 (138-215)||(26534685-26534762)
chr5 (138-219)||(130254-130335)
chr5 (136-215)||(130435-130514)
chr5 (140-215)||(8323895-8323970)
chr5 (138-215)||(791592-791669)
chr5 (137-215)||(33377835-33377913)
chr5 (138-219)||(42630711-42630792)
chr5 (137-215)||(6518202-6518280)
chr5 (137-215)||(19898941-19899019)
chr5 (141-215)||(42630894-42630968)
chr5 (136-195)||(791810-791869)
chr5 (141-215)||(35454637-35454710)
chr5 (138-215)||(5146690-5146767)
chr5 (136-217)||(35454449-35454529)
chr5 (136-203)||(14388519-14388585)
chr5 (138-215)||(8489123-8489200)
chr5 (138-215)||(13823335-13823412)
chr5 (138-203)||(14069861-14069925)
chr5 (136-203)||(19897223-19897289)
chr5 (138-203)||(5146504-5146568)
chr5 (136-215)||(40881790-40881867)
chr5 (138-201)||(6518404-6518466)
chr5 (150-203)||(228729-228782)
chr5 (138-203)||(13823150-13823214)
chr5 (155-203)||(40882018-40882066)
chr5 (141-199)||(228987-229044)
chr5 (153-201)||(27319668-27319716)
[»] chr4 (14 HSPs)
chr4 (136-216)||(3102726-3102806)
chr4 (138-219)||(3102540-3102621)
chr4 (137-226)||(9231579-9231668)
chr4 (138-215)||(40534150-40534227)
chr4 (139-219)||(13690216-13690296)
chr4 (138-226)||(40533963-40534051)
chr4 (138-203)||(5121006-5121071)
chr4 (138-203)||(11147014-11147079)
chr4 (157-215)||(9231767-9231825)
chr4 (138-203)||(18381508-18381573)
chr4 (138-215)||(18936864-18936941)
chr4 (138-215)||(37177813-37177890)
chr4 (138-201)||(18936676-18936738)
chr4 (141-216)||(11147211-11147285)
[»] chr3 (14 HSPs)
chr3 (138-226)||(33214615-33214703)
chr3 (136-215)||(27073095-27073174)
chr3 (140-226)||(10598810-10598896)
chr3 (138-215)||(33214443-33214520)
chr3 (138-226)||(36274301-36274389)
chr3 (136-219)||(33219070-33219153)
chr3 (138-215)||(19580497-19580574)
chr3 (150-215)||(36274131-36274196)
chr3 (137-215)||(36635425-36635503)
chr3 (138-199)||(27072913-27072974)
chr3 (1-120)||(21406625-21406746)
chr3 (138-200)||(10599000-10599062)
chr3 (141-203)||(36635241-36635302)
chr3 (137-215)||(11650999-11651077)
[»] chr2 (21 HSPs)
chr2 (136-219)||(42028761-42028844)
chr2 (137-215)||(42028577-42028655)
chr2 (138-215)||(13280022-13280099)
chr2 (138-219)||(31860079-31860160)
chr2 (138-215)||(31860272-31860349)
chr2 (138-211)||(36059278-36059351)
chr2 (136-215)||(16115044-16115123)
chr2 (138-215)||(2059671-2059748)
chr2 (150-219)||(7317647-7317716)
chr2 (138-203)||(7317834-7317899)
chr2 (135-199)||(13279837-13279901)
chr2 (138-219)||(2059490-2059571)
chr2 (138-215)||(15332849-15332926)
chr2 (135-215)||(31470584-31470663)
chr2 (138-219)||(16115227-16115308)
chr2 (139-203)||(3671822-3671885)
chr2 (138-210)||(38085967-38086038)
chr2 (138-195)||(15330449-15330505)
chr2 (138-195)||(31470785-31470841)
chr2 (138-215)||(38086154-38086231)
chr2 (138-215)||(3672010-3672087)
[»] scaffold0135 (2 HSPs)
scaffold0135 (137-226)||(37445-37534)
scaffold0135 (157-215)||(37633-37691)
[»] chr8 (12 HSPs)
chr8 (137-226)||(37994707-37994796)
chr8 (138-215)||(37994895-37994972)
chr8 (138-226)||(44036814-44036902)
chr8 (137-216)||(2814430-2814509)
chr8 (138-215)||(41539770-41539847)
chr8 (138-210)||(41539963-41540034)
chr8 (138-216)||(2814243-2814320)
chr8 (137-203)||(14193524-14193589)
chr8 (138-215)||(397192-397269)
chr8 (137-216)||(397006-397084)
chr8 (152-203)||(14193337-14193388)
chr8 (154-203)||(25101746-25101795)
[»] chr1 (24 HSPs)
chr1 (142-219)||(19059378-19059455)
chr1 (137-215)||(10227711-10227789)
chr1 (136-215)||(26552179-26552258)
chr1 (138-203)||(10227911-10227976)
chr1 (140-226)||(26551992-26552078)
chr1 (136-199)||(48871440-48871503)
chr1 (138-203)||(23346419-23346484)
chr1 (137-215)||(50892962-50893040)
chr1 (150-215)||(19059565-19059630)
chr1 (138-203)||(28217718-28217783)
chr1 (138-203)||(48752593-48752657)
chr1 (138-203)||(48871247-48871311)
chr1 (138-203)||(50893162-50893226)
chr1 (136-203)||(42180569-42180635)
chr1 (150-216)||(23346607-23346672)
chr1 (138-216)||(28217530-28217607)
chr1 (136-216)||(4156890-4156969)
chr1 (139-203)||(39669257-39669321)
chr1 (138-216)||(7062183-7062260)
chr1 (137-203)||(41834075-41834140)
chr1 (139-215)||(50904992-50905070)
chr1 (169-215)||(7062038-7062084)
chr1 (137-203)||(41833873-41833939)
chr1 (139-201)||(50905113-50905175)
[»] chr7 (10 HSPs)
chr7 (137-226)||(19804796-19804885)
chr7 (137-215)||(7298634-7298712)
chr7 (137-203)||(40521215-40521281)
chr7 (138-211)||(19805605-19805678)
chr7 (138-199)||(7298840-7298900)
chr7 (138-203)||(40521016-40521080)
chr7 (137-216)||(16979604-16979682)
chr7 (138-217)||(28948991-28949069)
chr7 (141-203)||(46567960-46568021)
chr7 (164-203)||(46568157-46568196)
[»] scaffold0140 (1 HSPs)
scaffold0140 (138-203)||(15847-15912)


Alignment Details
Target: scaffold0214 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 11892 - 11810
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11892 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttcca 11810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 11624 - 11691
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11624 ttgagtaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgaca 11691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 33022164 - 33022252
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 33022252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 33022431 - 33022355
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33022355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 21389021 - 21389098
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||| |||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 21389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 7789933 - 7789856
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 7789856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 7789679 - 7789744
Alignment:
Q  150 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  7789679 tgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgttttt 7789744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 21389282 - 21389208
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| || |||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 21389208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 28472624 - 28472568
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 195  Q
    ||||||| || |||||||||||||||||  ||||||  ||| |||||||||||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaa 28472568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 29859813 - 29859757
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 195  Q
    ||||||| || |||||||||||||||||  ||||||  ||| |||||||||||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaa 29859757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 26534506 - 26534594
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 26534594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 8323705 - 8323795
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  8323705 ttgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtttttccaccatgaa 8323795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 26534762 - 26534685
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 26534685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 130254 - 130335
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttcca 130335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 130514 - 130435
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  130514 ttgagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgtttt 130435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 8323970 - 8323895
Alignment:
Q  140 gaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 8323895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 791592 - 791669
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 33377913 - 33377835
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||    
T  33377913 tgagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 33377835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 42630711 - 42630792
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtttttcca 42630792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 6518202 - 6518280
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||| |||||||    
T  6518202 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgtttt 6518280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 19899019 - 19898941
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| |||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||||| |||||||    
T  19899019 tgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgtttt 19898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 42630968 - 42630894
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgtttt 42630894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 791869 - 791810
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 195  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  791869 ttgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 35454710 - 35454637
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 35454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 5146767 - 5146690
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| ||||| |||||||||||  |||||| |||||||||||||||||||||||||||| ||| |||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 5146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 35454449 - 35454529
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttc 217  Q
    ||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| || ||||||    
T  35454449 ttgagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttttttc 35454529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 14388585 - 14388519
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  14388585 ttgagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgaca 14388519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 8489123 - 8489200
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| ||||||||| || ||||| |||||| ||||||||||||||||||||| |||||| ||| |||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgtttt 8489200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 13823412 - 13823335
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| ||||||||||||| |||| ||||||  ||||||| ||||||||||||||||||| ||| |||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgtttt 13823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 14069861 - 14069925
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgaca 14069925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 19897223 - 19897289
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||| ||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  19897223 ttgaaaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgaca 19897289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 5146504 - 5146568
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgaca 5146568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 40881790 - 40881867
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||| || ||||||||||||||||||  || || ||||||||||| |||||||||||||||| ||| |||||||    
T  40881790 ttgagaaattgttgtgtaggaacgaacctaac--attattcttacaaacaataaattaaaacatgacacgtcattgtttt 40881867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 6518466 - 6518404
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 201  Q
    ||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||| ||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatga 6518404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 228729 - 228782
Alignment:
Q  150 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||||||||||| |||||| |||| |||||| ||||||||||||||||    
T  228729 tgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgaca 228782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 13823150 - 13823214
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| ||||||||||||||||| ||||||| | || |||||| ||| ||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaa-ctatcattcgtataaacaataaactaaaacatgaca 13823214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 40882066 - 40882018
Alignment:
Q  155 gaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgaca 40882018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacat 199  Q
    ||||| || ||||| ||||||| |||| |||||| ||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 27319716 - 27319668
Alignment:
Q  153 aggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 201  Q
    |||||| || ||||| |||||| ||||||||||||||||||||| ||||    
T  27319716 aggaaccaatctaacatatcattcttacaaacaacaaattaaaatatga 27319668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 3102806 - 3102726
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3102806 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttt 3102726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 3102540 - 3102621
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttcca 3102621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 9231579 - 9231668
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  9231579 tgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 9231668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 40534227 - 40534150
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 40534150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 13690216 - 13690296
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttcca 13690296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 40533963 - 40534051
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtttttccaccatgaa 40534051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 5121071 - 5121006
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgaca 5121006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 11147014 - 11147079
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgaca 11147079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 9231825 - 9231767
Alignment:
Q  157 acgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgtttt 9231767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 18381573 - 18381508
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| | |||| ||||||| ||||||||||||||||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgaca 18381508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 18936941 - 18936864
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| | |||||||||||||||  |||||| ||||||||||| |||||||||||||||| ||| |||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 18936864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 37177890 - 37177813
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| | ||||||||||| |||| |||||| |||||||||||||||||||||||||| | ||| |||||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgtttt 37177813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 18936676 - 18936738
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 201  Q
    ||||||||||| |||| |||||||| |||| |||||| ||||||||||||||||||||||||||    
T  18936676 gagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatga 18936738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 11147285 - 11147211
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||| ||||| |||||| ||||| ||| || ||||||||||| ||||||||| |||||||||| || |||||    
T  11147285 aaattcttatgtagaaacgaatctaac-tattattcttacaaacaataaattaaaatatgacatgtcatttttttt 11147211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 33214703 - 33214615
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 33214615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 27073174 - 27073095
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27073174 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 27073095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 10598810 - 10598896
Alignment:
Q  140 gaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 10598896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 33214443 - 33214520
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 33214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 36274389 - 36274301
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 36274301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 33219070 - 33219153
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||    
T  33219070 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgattcgtcattgtttttcca 33219153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 19580574 - 19580497
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgtttt 19580497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 36274131 - 36274196
Alignment:
Q  150 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  36274131 tgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 36274196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 36635503 - 36635425
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||    
T  36635503 tgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 36635425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 27072913 - 27072974
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacat 199  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 21406625 - 21406746
Alignment:
Q  1 ttgatgactttaagatgtgtcgttgctggtaattgttcatgga-gtgtaatttaaaataaatttaagcatgtttctgt-atttaaggtttgttgaataaa 98  Q
    |||||||||||||||||| |  ||||||| |||||||||| || ||||||||| ||| |||| ||||| ||||||||| ||| |||||||||||||||||    
T  21406625 ttgatgactttaagatgtataattgctggcaattgttcatagatgtgtaatttgaaacaaatgtaagcttgtttctgtcattaaaggtttgttgaataaa 21406724  T
Q  99 acaagaagttcttattttggat 120  Q
    || |||  ||||| ||||||||    
T  21406725 accagattttcttgttttggat 21406746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatg 200  Q
    ||||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 36635241 - 36635302
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||| |||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgaca 36635302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 11650999 - 11651077
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| | || ||||||||||||| |||||| |||||||||||||| |||||| |||| || || |||||||    
T  11650999 tgagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatgatatatcattgtttt 11651077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 136 - 219
Target Start/End: Complemental strand, 42028844 - 42028761
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  42028844 ttgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttttcca 42028761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 42028577 - 42028655
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  42028577 tgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgtttt 42028655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 13280099 - 13280022
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtttt 13280022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 31860079 - 31860160
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtcattatttttcca 31860160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 31860349 - 31860272
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgtttt 31860272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 36059351 - 36059278
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttg 211  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 16115044 - 16115123
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  16115044 ttgagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 16115123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 2059748 - 2059671
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 2059671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 7317647 - 7317716
Alignment:
Q  150 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  7317647 tgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtttttcca 7317716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 7317899 - 7317834
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgaca 7317834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 13279837 - 13279901
Alignment:
Q  135 gttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacat 199  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13279837 gttgagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 2059490 - 2059571
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||  || |||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacacttcattgtttttcca 2059571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 15332926 - 15332849
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||| |||||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtttt 15332849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 31470584 - 31470663
Alignment:
Q  135 gttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||    
T  31470584 gttgagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 31470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 16115308 - 16115227
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||  || |||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtttttcca 16115227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 3671822 - 3671885
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgaca 3671885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 38085967 - 38086038
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgtt 210  Q
    ||||||||||| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 38086038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 195  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 31470841 - 31470785
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaa 195  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaa 31470785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 38086231 - 38086154
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||| || |||||| || |||||||| |||||| ||||||||||||||||||||| |||| | ||| |||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgtttt 38086154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 3672087 - 3672010
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| || ||||||||| ||||  ||||||  ||||||| |||||||||||| || ||| ||| |||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgtttt 3672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 37445 - 37534
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  37445 tgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttttccaccatgaa 37534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 37691 - 37633
Alignment:
Q  157 acgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgtttt 37633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 37994707 - 37994796
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||    
T  37994707 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtttttccaccatgaa 37994796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 37994972 - 37994895
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgtttt 37994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 44036814 - 44036902
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtttttccaccatgaa 44036902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 2814509 - 2814430
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  2814509 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttt 2814430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 41539770 - 41539847
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgtttt 41539847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 41540034 - 41539963
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgtt 210  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 41539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 2814243 - 2814320
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||| |||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgtttttttt 2814320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 14193589 - 14193524
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  14193589 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgaca 14193524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 397269 - 397192
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||| ||||| |||||||||||| |||||| |||| ||||||||||||||||||||||| ||| |||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgtttt 397192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 397006 - 397084
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||||||| || ||||||||||||||| |||||| ||||||||||| |||||||||||| ||| || ||| |||||    
T  397006 tgagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgttgtttttttt 397084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 14193337 - 14193388
Alignment:
Q  152 taggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||||    
T  14193337 taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgaca 14193388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 25101746 - 25101795
Alignment:
Q  154 ggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||| ||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgaca 25101795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 19059378 - 19059455
Alignment:
Q  142 aattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttcca 219  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttcca 19059455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 10227711 - 10227789
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  10227711 tgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtttt 10227789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 26552258 - 26552179
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  26552258 ttgagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgtttt 26552179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 10227976 - 10227911
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 10227911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 26551992 - 26552078
Alignment:
Q  140 gaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||| ||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcgttgtttttccaccatgaa 26552078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 48871503 - 48871440
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacat 199  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  48871503 ttgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 48871440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 23346419 - 23346484
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgaca 23346484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 50892962 - 50893040
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    ||||||||| || ||||| ||||||| |||| |||||| |||||||||||||||||||||||||||| ||| |||||||    
T  50892962 tgagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 50893040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 19059630 - 19059565
Alignment:
Q  150 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||  ||||||||||    
T  19059630 tgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgtttt 19059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 28217783 - 28217718
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgaca 28217718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 48752657 - 48752593
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgaca 48752593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 48871247 - 48871311
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgaca 48871311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 50893226 - 50893162
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgaca 50893162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 42180569 - 42180635
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||||||||||    
T  42180569 ttgagaaattcttgtgtaggaacgaacctaa-ctagcattattacaaacaacaaattaaaacatgaca 42180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 23346672 - 23346607
Alignment:
Q  150 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| || |||||    
T  23346672 tgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacatgtcatttttttt 23346607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 28217530 - 28217607
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    ||||||||| | |||||||||||||||||  |||||| |||||||||||||||||||||||||||| ||| || |||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttt 28217607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 4156890 - 4156969
Alignment:
Q  136 ttgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    ||||||||||||| |||||||| ||||||||| |||||| |||||||| || |||||||||||||||| ||| || |||||    
T  4156890 ttgagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtcatttttttt 4156969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 39669321 - 39669257
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||| ||||| ||||||| |||| |||||| |||||||| |||||||||||||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgaca 39669257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 7062260 - 7062183
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||| || |||||||||||||||||| ||||||  |||||||||||||||||||| |||||| ||| || |||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcatttttttt 7062183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 41834140 - 41834075
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||||| ||||||||||||| |||| || |||  |||||||||||||||||||||||||||    
T  41834140 tgagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgaca 41834075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 50904992 - 50905070
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctat--catccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||| |||||||||||||||||  |||  |||  ||||||||||||| ||||||||||||| ||| |||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgtttt 50905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 7062038 - 7062084
Alignment:
Q  169 tatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtcattgtttt 7062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 41833873 - 41833939
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||||| | ||| |||||| ||||  |||||| |||||| |||||||||||||||||||||    
T  41833873 tgagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgaca 41833939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 50905175 - 50905113
Alignment:
Q  139 agaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 201  Q
    ||||||| || ||||  |||||| ||||| |||||| ||||||||||||||||||||||||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatga 50905113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 19804796 - 19804885
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttccatcatgaa 226  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| ||||  |||||||||||||| ||||||    
T  19804796 tgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtttttccaccatgaa 19804885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 7298634 - 7298712
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttt 215  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||| |||||||    
T  7298634 tgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgtttt 7298712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 40521281 - 40521215
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  40521281 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 40521215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 19805678 - 19805605
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttg 211  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttg 19805605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 7298900 - 7298840
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacat 199  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacat 7298840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 40521016 - 40521080
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgaca 40521080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 16979682 - 16979604
Alignment:
Q  137 tgagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgttttt 216  Q
    |||||||||||| |||||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||| || |||||    
T  16979682 tgagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcatttttttt 16979604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 28949069 - 28948991
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacatgtcgttgtttttc 217  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||| |||||||||||||||| ||| || ||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcattttttttc 28948991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 46567960 - 46568021
Alignment:
Q  141 aaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgaca 46568021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 46568196 - 46568157
Alignment:
Q  164 taacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgaca 46568157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 15847 - 15912
Alignment:
Q  138 gagaaattcttctgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgaca 203  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 15912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University