View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312-Insertion-14 (Length: 64)
Name: NF4312-Insertion-14
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312-Insertion-14 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 1e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-27
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 43623513 - 43623574
Alignment:
| Q |
3 |
aaatcttccttccttccttccaattgccaaccacaaactccacatactttctgaatactcag |
64 |
Q |
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| T |
43623513 |
aaatcttccttccttccttccaattgccaaccacaaactccacatactttctgaatactcag |
43623574 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-27
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 43995494 - 43995433
Alignment:
| Q |
3 |
aaatcttccttccttccttccaattgccaaccacaaactccacatactttctgaatactcag |
64 |
Q |
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| T |
43995494 |
aaatcttccttccttccttccaattgccaaccacaaactccacatactttctgaatactcag |
43995433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 30217382 - 30217352
Alignment:
| Q |
34 |
cacaaactccacatactttctgaatactcag |
64 |
Q |
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| T |
30217382 |
cacaaactccacatactttctgaatactcag |
30217352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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