View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4312-Insertion-15 (Length: 262)

Name: NF4312-Insertion-15
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4312-Insertion-15
NF4312-Insertion-15
[»] chr8 (4 HSPs)
chr8 (1-244)||(38125386-38125639)
chr8 (2-41)||(24802570-24802609)
chr8 (3-41)||(20170017-20170055)
chr8 (2-39)||(1673921-1673958)
[»] chr2 (6 HSPs)
chr2 (2-41)||(12457039-12457078)
chr2 (2-41)||(14949255-14949294)
chr2 (2-45)||(16152558-16152601)
chr2 (2-41)||(21924851-21924890)
chr2 (2-41)||(43939452-43939491)
chr2 (1-41)||(33810637-33810677)
[»] chr1 (4 HSPs)
chr1 (2-41)||(46836392-46836431)
chr1 (1-41)||(7255149-7255189)
chr1 (2-41)||(6951052-6951091)
chr1 (2-36)||(6380172-6380206)
[»] scaffold0263 (1 HSPs)
scaffold0263 (1-41)||(13388-13428)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-41)||(92016-92056)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-41)||(504606-504646)
[»] chr7 (5 HSPs)
chr7 (1-41)||(28885497-28885537)
chr7 (2-41)||(19989094-19989133)
chr7 (2-41)||(31448379-31448418)
chr7 (3-41)||(44391727-44391765)
chr7 (8-41)||(4024735-4024768)
[»] chr5 (4 HSPs)
chr5 (1-41)||(16725041-16725081)
chr5 (2-41)||(9475104-9475143)
chr5 (1-39)||(41328615-41328653)
chr5 (2-39)||(27788493-27788530)
[»] chr4 (2 HSPs)
chr4 (1-41)||(32564844-32564884)
chr4 (1-41)||(4473073-4473113)
[»] chr3 (2 HSPs)
chr3 (7-41)||(42380566-42380600)
chr3 (7-41)||(42409280-42409314)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-41)||(143371-143411)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38125639 - 38125386
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatatatgga-----------aacaaaacctcattcatcttaaatatcactcgggtcgtcaaaca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||||||    
T  38125639 gtaagcacccttttattagaggcaaaaggtgcttacatatatggacggagggagtaaacaaaacctcattcatcttaaatatcactcgg-tcgtcaaaca 38125541  T
Q  90 gtatagtgttgtaaatttgatgaattagtcaagccactgggataaggttaataatgatgaatttaactagtttgcatctgagttcaaacatcattttgta 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38125540 gtatagtgttgtaaatttgatgaataagtcaagccactgggataaggttaataatgatgaatttaactagtttgcatctgagttcaaacatcattttgta 38125441  T
Q  190 tattgcacaagaaaaatggtcacaaaggaccctgtgtcaaaattttaagtagcat 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38125440 tattgcacaagaaaaatggtcacaaaggaccctgtgtcaaaattttaagtagcat 38125386  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 24802609 - 24802570
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  24802609 taagcacccttttattagatgcaaaaggtgcttacatata 24802570  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 20170055 - 20170017
Alignment:
Q  3 aagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  20170055 aagcaccattttattagaggcaaaaagtgcttacatata 20170017  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 1673921 - 1673958
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacata 39  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  1673921 taagcacccttttatcagatgcaaaaggtgcttacata 1673958  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 12457039 - 12457078
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  12457039 taagcacccttttattagaggcaaagggtgcttacatata 12457078  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 14949255 - 14949294
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  14949255 taagcactcttttattagaggcaaatggtgcttacatata 14949294  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16152558 - 16152601
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatatatgga 45  Q
    |||||||||||||||||||| |||| |||||||| |||||||||    
T  16152558 taagcacccttttattagagacaaagggtgcttatatatatgga 16152601  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 21924890 - 21924851
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  21924890 taagcacccttttattagaggtaaaaggtgcttatatata 21924851  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 43939491 - 43939452
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  43939491 taagcacccttttattagaggcaaatagtgcttacatata 43939452  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33810637 - 33810677
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||| |||  |||||||||||||    
T  33810637 gtaagcacccttttattagaggaaaattgtgcttacatata 33810677  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 46836431 - 46836392
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  46836431 taagcacccttttattagaggcaaaatgtgcttacatata 46836392  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7255189 - 7255149
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  7255189 gtaagcacccttttattagagggaaaatgtgcttacatata 7255149  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 6951091 - 6951052
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  6951091 taagcacccttttattagaggcaaagtgtgcttacatata 6951052  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 6380172 - 6380206
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttac 36  Q
    |||||||||||||||||||| ||||||||||||||    
T  6380172 taagcacccttttattagagacaaaaggtgcttac 6380206  T

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Target: scaffold0263 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13428 - 13388
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  13428 gtaagcacccttctattagatgcaaaaggtgcttacatata 13388  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 92056 - 92016
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  92056 gtaagcacccttctattagatgcaaaaggtgcttacatata 92016  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 504646 - 504606
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  504646 gtaagcacctttttattagagacaaaaggtgcttacatata 504606  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28885537 - 28885497
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  28885537 gtaagcacccttttattagaggaaaatggtgcttacatata 28885497  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 19989133 - 19989094
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  19989133 taagcaccattttattagaggcaaatggtgcttacatata 19989094  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 31448418 - 31448379
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  31448418 taagcacccttttattagatgcaaagggtgcttacatata 31448379  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 44391765 - 44391727
Alignment:
Q  3 aagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  44391765 aagcaccattttattagaggcaaaaagtgcttacatata 44391727  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 4024735 - 4024768
Alignment:
Q  8 cccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||||| ||||||||||||||||||||||    
T  4024735 cccttttattataggcaaaaggtgcttacatata 4024768  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16725041 - 16725081
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  16725041 gtaagcacccttttattagaggcaaatgatgcttacatata 16725081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 9475104 - 9475143
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  9475104 taagcaccattttattcgaggcaaaaggtgcttacatata 9475143  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41328615 - 41328653
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacata 39  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  41328615 gtaagcacccttttattagagggaaagggtgcttacata 41328653  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 27788493 - 27788530
Alignment:
Q  2 taagcacccttttattagaggcaaaaggtgcttacata 39  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  27788493 taagcacccttttattagatgcaaaaggtacttacata 27788530  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32564884 - 32564844
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  32564884 gtaagcacccttttattagaggcaaagagtgcttacatata 32564844  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4473113 - 4473073
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  4473113 gtaagcacctttttattagaggcaaagagtgcttacatata 4473073  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 42380600 - 42380566
Alignment:
Q  7 acccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  42380600 acccttttattagaggcaaagggtgcttacatata 42380566  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 42409314 - 42409280
Alignment:
Q  7 acccttttattagaggcaaaaggtgcttacatata 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  42409314 acccttttattagaggcaaagggtgcttacatata 42409280  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 143371 - 143411
Alignment:
Q  1 gtaagcacccttttattagaggcaaaaggtgcttacatata 41  Q
    |||| ||||||||||||||||||||| | ||||||||||||    
T  143371 gtaaacacccttttattagaggcaaaggatgcttacatata 143411  T

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