View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4312_high_17 (Length: 239)

Name: NF4312_high_17
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4312_high_17
NF4312_high_17
[»] chr5 (4 HSPs)
chr5 (1-225)||(8938448-8938673)
chr5 (11-64)||(32059642-32059695)
chr5 (15-59)||(31030187-31030231)
chr5 (11-63)||(40159784-40159836)
[»] chr1 (3 HSPs)
chr1 (11-63)||(40304107-40304159)
chr1 (8-63)||(7273989-7274044)
chr1 (11-63)||(49517035-49517087)
[»] chr7 (2 HSPs)
chr7 (8-63)||(30456500-30456555)
chr7 (22-65)||(35536070-35536113)
[»] chr6 (5 HSPs)
chr6 (11-43)||(30533774-30533806)
chr6 (8-57)||(1497952-1498001)
chr6 (11-63)||(281901-281953)
chr6 (11-43)||(4247114-4247146)
chr6 (11-63)||(29274282-29274334)
[»] chr3 (1 HSPs)
chr3 (14-61)||(52618970-52619017)
[»] chr2 (4 HSPs)
chr2 (11-57)||(15377736-15377782)
chr2 (10-63)||(550471-550524)
chr2 (6-63)||(40145427-40145484)
chr2 (11-63)||(11513863-11513915)
[»] chr8 (4 HSPs)
chr8 (11-56)||(11795064-11795109)
chr8 (11-63)||(4510993-4511045)
chr8 (11-63)||(12361157-12361209)
chr8 (13-57)||(31804509-31804553)
[»] chr4 (2 HSPs)
chr4 (11-63)||(3175916-3175968)
chr4 (22-62)||(31038931-31038971)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8938673 - 8938448
Alignment:
Q  1 cctgcaaagtttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatcttatatataagtgtttatacttttagggcttaatttaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8938673 cctgcaaagtttatgaaaactgcttataacttatatgaaaacaatgtgactttatttaatcttatatataagtgtttatactattagggcttaatttaga 8938574  T
Q  101 tgtttatccagacaaagcctatgccaatatgtttgatgacttttagtaaataca-nnnnnnnnnnnnnnataaaagaattggctaatcactgattattaa 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||    
T  8938573 tgtttatccagacaaagcctatgcctatatgtttgatgacttttagtaaatacatctttttttttttttataaaagaattggctaatcactgattattaa 8938474  T
Q  200 aagctacattggataacttcaaaatg 225  Q
    ||||||||||||||||||||||||||    
T  8938473 aagctacattggataacttcaaaatg 8938448  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 32059642 - 32059695
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctta 64  Q
    |||||||||| ||||||| ||||||||||||||   ||||||||||| ||||||    
T  32059642 ttatgaaaacagcttatagcttatatgaaaacagtttgactttattttatctta 32059695  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 31030187 - 31030231
Alignment:
Q  15 gaaaactgcttataacttatatgaaaacaacgtgactttatttaa 59  Q
    ||||||| |||||| ||||||||| |||||| |||||||||||||    
T  31030187 gaaaactacttatagcttatatgataacaacttgactttatttaa 31030231  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 40159836 - 40159784
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    ||||||||||   |||||||||||||||||||||  |||||||| ||||||||    
T  40159836 ttatgaaaacgatttataacttatatgaaaacaatttgactttacttaatctt 40159784  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 40304107 - 40304159
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| |||||    
T  40304107 ttatgaaaacagcttataacttatatgaaaacaatgtgattttattttatctt 40304159  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 7273989 - 7274044
Alignment:
Q  8 agtttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||| |||| ||||||||||| |||||||||||  ||||||||||| |||||    
T  7273989 agtttatggaaacagcttataacttgtatgaaaacaatttgactttatttcatctt 7274044  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 49517087 - 49517035
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||| ||||||| |||| ||||||||||  ||||||||||| |||||    
T  49517087 ttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatctt 49517035  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 30456500 - 30456555
Alignment:
Q  8 agtttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||||||  ||||||||||||||||||||||  ||||||||||| |||||    
T  30456500 agtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatctt 30456555  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 35536113 - 35536070
Alignment:
Q  22 gcttataacttatatgaaaacaacgtgactttatttaatcttat 65  Q
    |||||||||||||||||||||||  ||||||||||| |||||||    
T  35536113 gcttataacttatatgaaaacaatttgactttattttatcttat 35536070  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 30533806 - 30533774
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaaca 43  Q
    |||||||||||||||||||||||||||||||||    
T  30533806 ttatgaaaactgcttataacttatatgaaaaca 30533774  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 1498001 - 1497952
Alignment:
Q  8 agtttatgaaaactgcttataacttatatgaaaacaacgtgactttattt 57  Q
    |||||||||||||| ||||||||| |||||||||||   |||||||||||    
T  1498001 agtttatgaaaacttcttataactcatatgaaaacagtttgactttattt 1497952  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 281901 - 281953
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    ||||||| || ||||||| |||||||||||||||  ||||||||||| |||||    
T  281901 ttatgaacacagcttatagcttatatgaaaacaagttgactttattttatctt 281953  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 4247114 - 4247146
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaaca 43  Q
    |||||||||| ||||||||||||||||||||||    
T  4247114 ttatgaaaacagcttataacttatatgaaaaca 4247146  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 29274282 - 29274334
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||| | ||||| |||||||||||||||  ||||||||||| |||||    
T  29274282 ttatgaaaacagtttatagcttatatgaaaacaatttgactttattttatctt 29274334  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 52619017 - 52618970
Alignment:
Q  14 tgaaaactgcttataacttatatgaaaacaacgtgactttatttaatc 61  Q
    ||||||| |||||||||||||||||||||||  | |||||||||||||    
T  52619017 tgaaaacagcttataacttatatgaaaacaatttaactttatttaatc 52618970  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 15377782 - 15377736
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttattt 57  Q
    |||||||||| |||||||||||||||||||||||  | |||||||||    
T  15377782 ttatgaaaacagcttataacttatatgaaaacaatctaactttattt 15377736  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 550524 - 550471
Alignment:
Q  10 tttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||||| |||||| ||| |||| ||||||| ||||||||||| |||||    
T  550524 tttatgaaaactacttatatcttgtatggaaacaacttgactttattttatctt 550471  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 40145484 - 40145427
Alignment:
Q  6 aaagtttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||| ||||||||||  ||||||||||| || |||||||| ||||||||||| |||||    
T  40145484 aaagcttatgaaaacaacttataacttacataaaaacaacttgactttattttatctt 40145427  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 11513915 - 11513863
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    ||||||||||  |||||| |||||||||||||||  ||||||||||| |||||    
T  11513915 ttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatctt 11513863  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 11795109 - 11795064
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatt 56  Q
    |||||||| | ||||||||||||||||||||||  |||||||||||    
T  11795109 ttatgaaatcagcttataacttatatgaaaacagtgtgactttatt 11795064  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 4511045 - 4510993
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||| ||||||||||||||||| || ||  ||||||| |||||||||    
T  4511045 ttatgaaaacagcttataacttatatgagaaaaatttgactttttttaatctt 4510993  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 12361209 - 12361157
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||| ||||||| |||||||||||||||  |||||| |||| |||||    
T  12361209 ttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctt 12361157  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 31804509 - 31804553
Alignment:
Q  13 atgaaaactgcttataacttatatgaaaacaacgtgactttattt 57  Q
    ||||||||||||||||||||||| ||||||||  | |||||||||    
T  31804509 atgaaaactgcttataacttataggaaaacaatttaactttattt 31804553  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 3175968 - 3175916
Alignment:
Q  11 ttatgaaaactgcttataacttatatgaaaacaacgtgactttatttaatctt 63  Q
    |||||||||| ||||||||||||  |||||||||  ||||||||||| |||||    
T  3175968 ttatgaaaacagcttataacttacttgaaaacaatttgactttattttatctt 3175916  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 31038931 - 31038971
Alignment:
Q  22 gcttataacttatatgaaaacaacgtgactttatttaatct 62  Q
    |||||||||||||||||||||||  ||||||||||| ||||    
T  31038931 gcttataacttatatgaaaacaatttgactttattttatct 31038971  T

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