View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4312_high_2 (Length: 535)

Name: NF4312_high_2
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4312_high_2
NF4312_high_2
[»] chr7 (3 HSPs)
chr7 (182-467)||(11840573-11840858)
chr7 (13-59)||(11840982-11841028)
chr7 (223-334)||(551032-551143)
[»] chr8 (1 HSPs)
chr8 (182-331)||(25276008-25276157)
[»] chr4 (1 HSPs)
chr4 (186-255)||(26891606-26891674)
[»] chr6 (2 HSPs)
chr6 (186-266)||(17700275-17700353)
chr6 (189-245)||(16850947-16851003)
[»] chr5 (2 HSPs)
chr5 (189-289)||(31884090-31884188)
chr5 (425-459)||(7248453-7248487)
[»] chr3 (1 HSPs)
chr3 (210-263)||(14351449-14351502)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 182 - 467
Target Start/End: Complemental strand, 11840858 - 11840573
Alignment:
Q  182 tctccttaaattttttgattggaaagataaaaacacattaattaaatatgggataaagatgcaattaacaaaaattctatgtaaaaagtcttttcaagtt 281  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||    
T  11840858 tctcattaaattttttgattcgaaagataaaaacacattaattaaatatggggtaaagatgcaattaacaaaaattctatttaaaaaatcttttcaagtt 11840759  T
Q  282 tgatttagttaataaagaacacattgtccaatttgattgattgatatcatgaaagataagttactcccggtcctaaatcatgagggggtaacatagatct 381  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  11840758 tgatttagttaataaagaacacattgttcagtttgattggttgatatcatgaaagataagttactcccgatcccaaatcatgagcgggtaacatagatct 11840659  T
Q  382 cacttaacttgtcaaaaaagatattttcaaacagaaaattattttgaaaatacaaatcaaacgatataaaagtaataactatacaa 467  Q
    ||||||||||||||||||||||||||| ||| || ||||| |||| ||||||||| || |||||||||||||||||||||||||||    
T  11840658 cacttaacttgtcaaaaaagatattttaaaaaaggaaattgttttaaaaatacaagtcgaacgatataaaagtaataactatacaa 11840573  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 11841028 - 11840982
Alignment:
Q  13 aaaataacgttttcgaatgttgttgttttttcttcagatccaagctt 59  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  11841028 aaaataacgttttggaatgttgttgttttttcttcagatccaagctt 11840982  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 551143 - 551032
Alignment:
Q  223 ttaaatatgggataaagatgcaattaacaaaaattctatgtaaaaagtcttttcaagtttgatttagttaataaagaacacattgtccaatttgattgat 322  Q
    ||||||||||||||||||||||| ||| ||||| | ||||| |||| | ||| || |||||||||| || |||||| |||||||   || |||||||| |    
T  551143 ttaaatatgggataaagatgcaaataataaaaaatttatgtgaaaaatatttccatgtttgatttaattgataaagtacacattactcattttgattggt 551044  T
Q  323 tgatatcatgaa 334  Q
     |||||||||||    
T  551043 ggatatcatgaa 551032  T

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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 182 - 331
Target Start/End: Complemental strand, 25276157 - 25276008
Alignment:
Q  182 tctccttaaattttttgattggaaagataaaaacacattaattaaatatgggataaagatgcaattaacaaaaattctatgtaaaaagtcttttcaagtt 281  Q
    |||| |||||||||| ||||| ||||||||||  ||||||||| |||| ||||||||||||||| |||||||||||||||||||||| | ||||||  |     
T  25276157 tctcattaaatttttggattgaaaagataaaagaacattaattgaatacgggataaagatgcaaataacaaaaattctatgtaaaaaatattttcattta 25276058  T
Q  282 tgatttagttaataaagaacacattgtccaatttgattgattgatatcat 331  Q
    ||||||| ||||||||| ||||| |   ||||||||||| ||||||||||    
T  25276057 tgatttatttaataaagtacacactactcaatttgattggttgatatcat 25276008  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 26891674 - 26891606
Alignment:
Q  186 cttaaattttttgattggaaagataaaaacacattaattaaatatgggataaagatgcaattaacaaaaa 255  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  26891674 cttaaatttttt-attggaaagataaaaacacattaattgaatatggggtaaagatgcaaataacaaaaa 26891606  T

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Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 17700353 - 17700275
Alignment:
Q  186 cttaaattttttgattggaaagataaaaacacattaattaaatatgggataaagatgcaattaacaaaaattctatgtaaa 266  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||| | ||||||||    
T  17700353 cttaaatttttt-attggaaagataaaaacacattaattgaatatggg-taaagatgcaaataacaaaaaatttatgtaaa 17700275  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 16851003 - 16850947
Alignment:
Q  189 aaattttttgattggaaagataaaaacacattaattaaatatgggataaagatgcaa 245  Q
    ||||||||||||  |||| |||||| |||||||||| |||||| |||||| ||||||    
T  16851003 aaattttttgatcagaaaaataaaagcacattaattgaatatgagataaaaatgcaa 16850947  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 31884188 - 31884090
Alignment:
Q  189 aaattttttgattggaaagataaaaacacattaattaaatatgggataaagatgcaattaacaaaaattctatgtaaaaagtcttttcaagtttgattta 288  Q
    |||||||||||| ||||| ||||||  | ||||||| |||||||  ||||||||||| ||||  ||||| ||| |||||| ||||||||  |||||||||    
T  31884188 aaattttttgatgggaaaaataaaagaaaattaattgaatatggagtaaagatgcaaataac--aaattatatttaaaaaatcttttcatatttgattta 31884091  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 459
Target Start/End: Original strand, 7248453 - 7248487
Alignment:
Q  425 ttgaaaatacaaatcaaacgatataaaagtaataa 459  Q
    ||||||||||||||||||| |||||||||||||||    
T  7248453 ttgaaaatacaaatcaaacaatataaaagtaataa 7248487  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 14351502 - 14351449
Alignment:
Q  210 aaaaacacattaattaaatatgggataaagatgcaattaacaaaaattctatgt 263  Q
    ||||||| ||||||| |||||| | |||||||| |||||||||||||| |||||    
T  14351502 aaaaacaaattaattgaatatgtggtaaagatgtaattaacaaaaattatatgt 14351449  T

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