View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4312_high_21 (Length: 220)
Name: NF4312_high_21
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5543304 - 5543101
Alignment:
| Q |
1 |
caccagccatctccgcctcttggccggagaatccctccggcaatcctttaattgtgggaggaatattcaccacgacccagcatgtccacggtacaattgg |
100 |
Q |
| |
|
||||| |||||||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5543304 |
caccacccatctcctcctctttgccggaaaatccctccggcaatcctttaattgtcggaggaatattcaccacgacccagcatgtccacggtacaattgg |
5543205 |
T |
|
| Q |
101 |
accttctgggtcgggtgtatcaatatcctccacaacaagtgcaagagattttgtcccctcaggtatgttgtaccattccaatggtggtgatatgtttttc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
5543204 |
accttctggatcgggtgtatcaatatcctccacaacaagtgcaagagattttgtcccctctggtaggttgtaccattctaatggtggtgatatgtttttc |
5543105 |
T |
|
| Q |
201 |
tttg |
204 |
Q |
| |
|
|||| |
|
|
| T |
5543104 |
tttg |
5543101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University