View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4312_high_4 (Length: 406)
Name: NF4312_high_4
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 33309340 - 33308958
Alignment:
| Q |
10 |
gcaaagggtttgaggtaaatagatggaataacaaaaat-gatcatttttgttcttgaaataaaagtttgacaattccatcctcaattttttaaaatagca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
33309340 |
gcaaagggtttgaggtaaatagatggaataacaaaaattgatcatttt-gttcttgaaataaaagtgtgacaattccatcatcaattttttaaaatagca |
33309242 |
T |
|
| Q |
109 |
aaaaccatgactccatgctccttnnnnnnn--ctccaagtcatctcaagattgttagagatagcttctagctctgcattcgtattggtagtaatgtcaca |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
33309241 |
aaaaccatgactccatgctccttaaaaaaaaactccaagtcatctcaagattgttagagatagcttccagctctgcattcgtattgatagtaatgccaca |
33309142 |
T |
|
| Q |
207 |
caaccgttgaaggaactcgatattcaatttacattagtgtcatggtttaaacctccaaaatcatagcatcttggattcctaagagagttatcatcaacat |
306 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
33309141 |
caaccgctgaaggaactcgatatccaatttacattggtgtcatggtttaaaccttcaaaatcatagcgtcttggattactaagagagttaccatcaacat |
33309042 |
T |
|
| Q |
307 |
ttaatttaattgtttccttgatggaggttttcaaacaaccaagtgaggttccatgtatgtaatatcggaatccgagctcctaat |
390 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
33309041 |
ttaatttaattgtttccttggtggaggttttcaaacaaccaagcgaggttccctgtatgtaatatcggaatccgagctcttaat |
33308958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 22081744 - 22081780
Alignment:
| Q |
164 |
agatagcttctagctctgcattcgtattggtagtaat |
200 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
22081744 |
agatagcttgtagctctgcattcatattggtagtaat |
22081780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University