View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_high_7 (Length: 375)
Name: NF4312_high_7
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 33442836 - 33443185
Alignment:
| Q |
14 |
aatatcttgagagttctcagaaagcctcaaagttagaagccgagtgtcagagactccgcctcgtgattcaaaaaagatctcccggtcttgctggttcggt |
113 |
Q |
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| T |
33442836 |
aatatcttgagagttctcagaaagcctcaaagttagaagccgagtgtcagagactccgcctcgtgattcaaaaaagatctcccggtcttgctggttcggt |
33442935 |
T |
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| Q |
114 |
gaataggaagaatgaaatcggaacaatgagaaaagagacaggtatggtaagaaagaagttaaatcctaatagggacatgctttacaaaaataatgatgtt |
213 |
Q |
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| T |
33442936 |
gaataggaagaatgaaatcggaacaatgagaaaagagacaggtatggtaagaaagaagttaaatcctaatagggacatgctttacaaaaataatgatgtt |
33443035 |
T |
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| Q |
214 |
ggaaactctacacgagtatcccaaaagagtatcggcttgatgatcaaacatatacaggatatggatgaagaaaacaaggctctcaaaagaattttaaacg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443036 |
ggaaactctacacgagtatcccaaaagagtatcggcttgatgatcaaacatatacaggatatggatgaagaaaacaaggctctcaaaagaattttaaacg |
33443135 |
T |
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| Q |
314 |
agaaaaactctgaactagattcttcaagatttatgtatggtgaaacagca |
363 |
Q |
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| T |
33443136 |
agaaaaactctgaactagattcttcaagatttatgtatggtgaaacagca |
33443185 |
T |
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