View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_1 (Length: 911)
Name: NF4312_low_1
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 585 - 901
Target Start/End: Complemental strand, 51060043 - 51059727
Alignment:
| Q |
585 |
taaatatttccaaatggacgtacggactatcatttatttcatttcccttcctcattcttttcttttcacacaacttttccctcctaaatttccaaataga |
684 |
Q |
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| T |
51060043 |
taaatatttccaaatggacgtacggactatcatttatttcatttcccttcctcattcttttcttttcacacaacttttccctcctaaatttccaaataga |
51059944 |
T |
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| Q |
685 |
ttttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaatttttactttattttattgtttaatactttgatctatttcattcnnn |
784 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51059943 |
ttttaaaccgttggaatgtctagatatctttttcaataagtgtacgtattcaatttttactttattttattgtttaatactttgatccatttcattcttt |
51059844 |
T |
|
| Q |
785 |
nnnnaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacct |
884 |
Q |
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| T |
51059843 |
ttttaatgtccaaaggtgtcagattgataagtaattaacacaagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacct |
51059744 |
T |
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| Q |
885 |
ccggatgcatgatgatg |
901 |
Q |
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| T |
51059743 |
ccggatgcatgacgatg |
51059727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 51060641 - 51060413
Alignment:
| Q |
19 |
agtgtgaaacagatcaattatttagtgaagtatatatccaacttttataagatatttttacggagttagggta-acgttagttgattatgatgaaaatta |
117 |
Q |
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| T |
51060641 |
agtgtgaaacagatcaattatttagtgaagtatatatccaacttttataagatatttttacggag----ggtatacgttagttgattatgatgaaaatta |
51060546 |
T |
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| Q |
118 |
aatacacatacaattaactcagtaggtaaatgatattgcataatatatgtaaggatcggggttagaacttcggacactccatttatccactttaaatgaa |
217 |
Q |
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| T |
51060545 |
aatacagatacaattaactcagtaggtaaatgatattgtataatatatgtaaggatcgggattagaacttcggacactccatttatacattttaaatgaa |
51060446 |
T |
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| Q |
218 |
tttttagacactaagctatttaacaaaaatgac |
250 |
Q |
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| T |
51060445 |
tttttagacactaagctatttaacaaaaatgac |
51060413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 280 - 452
Target Start/End: Complemental strand, 51060378 - 51060205
Alignment:
| Q |
280 |
aatgagcaaatgaggtggagttatagaaataaaa--tgagacaactgattctttaagttttgcctgagtgtcaaataggctcaaactttattcagagagt |
377 |
Q |
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| T |
51060378 |
aatgagcaaatgaggtggagttatagaaaaaaaaaatgagacaactgattctttaagttttgtctgagtgtcaaataggctcaaactttattcagagagt |
51060279 |
T |
|
| Q |
378 |
aggaattggatttgatattttagggtttacaacagacacttgccactaaatctttgaagaggtttatggaatgtg |
452 |
Q |
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| T |
51060278 |
aggaattggatttgatatttta-ggtttacaacacacacttgccactaaatctttgaagaggtttatggaatgtg |
51060205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 447 - 542
Target Start/End: Complemental strand, 51060179 - 51060084
Alignment:
| Q |
447 |
aatgtgatcatatttatggtttgaatgggaatttgatggaatggtttatggtctctctttaatatctcattgttcttctaattctctaatttgaag |
542 |
Q |
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| T |
51060179 |
aatgtgatcatatttatggtttgaatgggaatttgatagaatgctttatgatctctctttaatatctcattgttcttctaattctctaatttgaag |
51060084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 14349670 - 14349728
Alignment:
| Q |
149 |
gatattgcataatatatgtaaggatcggggttagaacttcggacactccatttatccac |
207 |
Q |
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| T |
14349670 |
gatattgcatattatatgtagggatcggggttcgaaccccggacactacatttctccac |
14349728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 826 - 891
Target Start/End: Original strand, 34617982 - 34618047
Alignment:
| Q |
826 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
891 |
Q |
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| T |
34617982 |
aagtataacattgtttaatatggagatttggagtgagctcttttggaccagcattacctccggatg |
34618047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 664 - 725
Target Start/End: Original strand, 34617838 - 34617899
Alignment:
| Q |
664 |
cctcctaaatttccaaatagattttaaaccgttggaatgtctagatatctttttcaataagt |
725 |
Q |
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||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
34617838 |
cctcctaaacttccaaatagatgttaaaccattggaatgtctagatatctttttcaacaagt |
34617899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 38774097 - 38774155
Alignment:
| Q |
149 |
gatattgcataatatatgtaaggatcggggttagaacttcggacactccatttatccac |
207 |
Q |
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| T |
38774097 |
gatattgcattttatatgcagggatcggggttcgaacttcggacactccacttctccac |
38774155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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