View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4312_low_10 (Length: 403)

Name: NF4312_low_10
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4312_low_10
NF4312_low_10
[»] chr4 (3 HSPs)
chr4 (9-376)||(970173-970541)
chr4 (263-297)||(54521919-54521953)
chr4 (265-297)||(5912560-5912592)
[»] chr7 (1 HSPs)
chr7 (243-287)||(8688210-8688254)
[»] chr2 (1 HSPs)
chr2 (228-287)||(10582321-10582380)
[»] chr6 (1 HSPs)
chr6 (213-317)||(30863912-30864015)
[»] chr1 (2 HSPs)
chr1 (241-306)||(45464078-45464143)
chr1 (243-283)||(6373233-6373273)
[»] chr3 (1 HSPs)
chr3 (243-287)||(25181661-25181705)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 970173 - 970541
Alignment:
Q  9 gaaatgaaccatgggtctaggctgtttcacacgtaaataatgacaatcacatagtttgatcacactgactacctgcacatcagtaacaggtgctgccgct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  970173 gaaatgaaccatgggtctaggctgtttcacacgtaaataatgacaatcacataatttgatcacactgactacctgcacatcagtagcaggtgctgccgct 970272  T
Q  109 cgagggataatagtagttccagaagataacaacctgacaaaagggtacatagcacatacgatcagggcatggttaccagtatcttcggtacatactagtc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  970273 cgagggataatagtagttccagaagataacaacctgacaaaagggtacatagcacatacgatcagggcatggttaccagtatcttcgggacatactagtc 970372  T
Q  209 aatccaatcgatacaattcctagtgcgtatcaattttgcacatgaatcttatcttaaatcctgattcactatgatgaatactgattcatggtaatgaacc 308  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  970373 aatccaatcgctacaattcctagtgcgtatcaattttgcacatgaattttatcttaaatcctgattcactatgatgaatactgattcattgtaatgaacc 970472  T
Q  309 aatacctaaggttagtcaatccatccacttgtttttg-tcaactttgtatagtcaatcatttttatttt 376  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  970473 attacctaaggttagtcaatccatccacttgtttttgttcaactttgtatagtcaatcatttttatttt 970541  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 54521953 - 54521919
Alignment:
Q  263 taaatcctgattcactatgatgaatactgattcat 297  Q
    ||||||||||||||||||||||||| |||||||||    
T  54521953 taaatcctgattcactatgatgaatcctgattcat 54521919  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 5912560 - 5912592
Alignment:
Q  265 aatcctgattcactatgatgaatactgattcat 297  Q
    ||||||||||||||||||||||| |||||||||    
T  5912560 aatcctgattcactatgatgaatcctgattcat 5912592  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 8688210 - 8688254
Alignment:
Q  243 tttgcacatgaatcttatcttaaatcctgattcactatgatgaat 287  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||    
T  8688210 tttgcacatgaatctcatcttgaatcctgattcattatgatgaat 8688254  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 10582380 - 10582321
Alignment:
Q  228 ctagtgcgtatcaattttgcacatgaatcttatcttaaatcctgattcactatgatgaat 287  Q
    |||||| ||||| |||||| |||||||||| ||||| | ||||||||| |||||||||||    
T  10582380 ctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattctctatgatgaat 10582321  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 30864015 - 30863912
Alignment:
Q  213 caatcgatacaattc-ctagtgcgtatcaattttgcacatgaatcttatcttaaatcctgattcactatgatgaatactgattcatggtaatgaaccaat 311  Q
    |||||||||||| || |||||| ||||| |||| | |||||||||| ||||| || ||| ||||||||||||||||  ||||||||  ||||||| || |    
T  30864015 caatcgatacaaatctctagtgtgtatctatttgg-acatgaatctcatcttcaaccct-attcactatgatgaattgtgattcattctaatgaatcatt 30863918  T
Q  312 acctaa 317  Q
    ||||||    
T  30863917 acctaa 30863912  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 45464078 - 45464143
Alignment:
Q  241 attttgcacatgaatcttatcttaaatcctgattcactatgatgaatactgattcatggtaatgaa 306  Q
    |||||| |||||||||  | ||||||||||||||| ||||||||||| | |||| || ||||||||    
T  45464078 attttgaacatgaatcccaacttaaatcctgattcgctatgatgaatcccgatttattgtaatgaa 45464143  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 6373233 - 6373273
Alignment:
Q  243 tttgcacatgaatcttatcttaaatcctgattcactatgat 283  Q
    |||| |||||||||| ||||| |||||||||||||||||||    
T  6373233 tttggacatgaatctcatcttgaatcctgattcactatgat 6373273  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 25181705 - 25181661
Alignment:
Q  243 tttgcacatgaatcttatcttaaatcctgattcactatgatgaat 287  Q
    |||| |||||||| | ||||||||||| |||||||||||||||||    
T  25181705 tttggacatgaatatcatcttaaatcccgattcactatgatgaat 25181661  T

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