View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4312_low_11 (Length: 401)
Name: NF4312_low_11
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 331
Target Start/End: Complemental strand, 52560586 - 52560278
Alignment:
| Q |
30 |
ggtatgattctacgctatggtaagtatttattttattctgtttctttccaatggttgttaaacattctcattctctttatgtttccatcatatggttgtt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52560586 |
ggtatgattctacgctatggtaagtatttattttattctgtttctttccaatggtagctaaacattctcattctctttatgtttccatcatatggttgtt |
52560487 |
T |
|
| Q |
130 |
tagtctattcgttctctatatttgtctatcctatgatttgttaagaattttagttttctataaacttttatcctatggtgatttagcctttttcattctc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52560486 |
tagtctattcgttctctatatttgtctatcctatgatttgttaagcattttagttttctataaacttttatcctatggtgatttagcatttttcattctc |
52560387 |
T |
|
| Q |
230 |
tgtatgtttata------ttcaatgatagttaaaacattttcattctctaaatgttttatcctatgattatgtcagatgattagggcatccc-gtggatc |
322 |
Q |
| |
|
| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
52560386 |
tatatgtttatattctatttctatgatagttaaaacattttcattctctaaatgttttatcctatgattatgtcagatgattagggcatcccggtggatc |
52560287 |
T |
|
| Q |
323 |
aaccatatt |
331 |
Q |
| |
|
||||||||| |
|
|
| T |
52560286 |
aaccatatt |
52560278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 384
Target Start/End: Complemental strand, 52560144 - 52560098
Alignment:
| Q |
338 |
tctttgtgcttctacccttgttgataaaattttgttagccaaaattt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52560144 |
tctttgtgcttctacccttgttgataaaattttgttagccaaaattt |
52560098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University