View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_13 (Length: 365)
Name: NF4312_low_13
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 29091102 - 29091417
Alignment:
| Q |
12 |
aaaggcaaagaattgcttctaagttaggctctatccacaataaaa----tagcaaacccataaagttaatcttgcggctaagaatttcatcaaagcaaag |
107 |
Q |
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| T |
29091102 |
aaaggcaaagaattgcttctaagttaggct--atccacaataaaagaaatactaaacccataaagttcattttgcggctaagaatttcatcaaagcaaag |
29091199 |
T |
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| Q |
108 |
taacgttttggttttttaataccaaagaaactcataattcatcaaaacacaaaactactctatattacaaatatgagatacattatatatgcattatttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29091200 |
taacgttttggttttttaataccaaagaaactcataattcatcataagacaaaactactctatattacaaatatgagaaacattatatatgcattatttc |
29091299 |
T |
|
| Q |
208 |
tacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtacctt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29091300 |
tacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgtacctt |
29091399 |
T |
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| Q |
308 |
ggaaactcttaagtttca |
325 |
Q |
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|||||||||||||||||| |
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| T |
29091400 |
ggaaactcttaagtttca |
29091417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 29083775 - 29084095
Alignment:
| Q |
8 |
tagcaaaggcaaagaattgcttctaagttaggctctatccacaata----aaatagcaaacccataaagtt-aatcttgcggctaagaatttcatcaaag |
102 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29083775 |
tagcaaaggcaaagaattgcttctaagttaggct--atccacaatataagaaatacttaacccataaagtttaatcttgcggctaagaatttcatcaaag |
29083872 |
T |
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| Q |
103 |
caaagtaacgttttggttttttaataccaaagaaactcataattcatcaaaacacaaaactactctatattacaaatatgagatacattatatatgcatt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | || || || | |||||||||||||||||| |||||||||| |||| |
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| T |
29083873 |
taaagtaacgttttggttttttaataccaaagaaactcataattcatcattgctcacaaatagtttatattacaaatatgagaagcattatatatccatt |
29083972 |
T |
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| Q |
203 |
atttctacatcacatattatcaattctttctatttctttcccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgt |
302 |
Q |
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||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29083973 |
atttctacatcaccatttatcaatattttctatttcttccccaaaggacacaaccataaaataacaaacaactataatcattcataatgccaagagttgt |
29084072 |
T |
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| Q |
303 |
accttggaaactcttaagtttca |
325 |
Q |
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||||||||||||| ||||||||| |
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| T |
29084073 |
accttggaaactcctaagtttca |
29084095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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