View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4312_low_14 (Length: 337)
Name: NF4312_low_14
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 35437790 - 35437482
Alignment:
| Q |
11 |
gaacctgtgagcatgataaatcatcaattaagaacaaagataaagaaagtactagaacaaacataccaagataatgttttatctaattcggtctaaattg |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
35437790 |
gaacctatgagcatgataaatcatcaattaagaacaaagataaagaaagtactagaacaaacataccaagataatgttttatccaattcgacctaaattg |
35437691 |
T |
|
| Q |
111 |
atctacatttgaaggagatagtaacttttcaaacacactatcaataa-tctttataaaagattttaaaaagttacaaaaaattgatttcaaaagttctcc |
209 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35437690 |
atctacatttgaaggagatggtaatttttcaaacacaatatcaataaatcttcttaaaagattttaaaaagttacaaaaaattaatttcaaaagttctcc |
35437591 |
T |
|
| Q |
210 |
atgaacatacatcaattactacccttttataactccgttggtgttcagagattgagaaaaatacaatttatatctcctttgtcaaatatatttttctcct |
309 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35437590 |
atgaacatacctcaatttctacccttttataactccgttggtgttcagagattgagaaaaatacaatttatatctcctttgtcaaatatatttttctcct |
35437491 |
T |
|
| Q |
310 |
tgttgtggt |
318 |
Q |
| |
|
||||||||| |
|
|
| T |
35437490 |
tgttgtggt |
35437482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University