View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_15 (Length: 312)
Name: NF4312_low_15
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 30731011 - 30731295
Alignment:
| Q |
15 |
agttatagtcattaagattactactagtggtactacttaataatactaatattatactacatgttacaatgaatattaattaataatgcagctcatcaag |
114 |
Q |
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| T |
30731011 |
agttatagtcattaagattactactagtggtactacttaataatactaatattatactacatgttacaatgaatattaattaataatgcagctcatcaag |
30731110 |
T |
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| Q |
115 |
aagcattgaagagggagatagagaggctgaggcaagtgtatcaccaacaacaaaacatcaagaacaatgctacagcagcagcagtgtcaccatctccatc |
214 |
Q |
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| T |
30731111 |
aagcattgaagagggagatagagaggctgaggcaagtgtatcaccaacaacaaaacatcaagaacaatgctacagcagcagcagtgtcaccatctccatc |
30731210 |
T |
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| Q |
215 |
acctaaaccacgatgtgataatgatactcacattgaaaatgaacatcttatcaatgtttgagacatggctagttcacatgatcct |
299 |
Q |
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| T |
30731211 |
acctaaaccacgatgtgataatgatactcacattgaaaatgaacatcttatcaatgtttgagacatggctagttcacatgatcct |
30731295 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 32639413 - 32639352
Alignment:
| Q |
103 |
cagctcatcaagaagcattgaagagggagatagagaggctgaggcaagtgtatcaccaacaa |
164 |
Q |
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| T |
32639413 |
cagctcatcaagaagcattaaagaaggaaatagaaaggttgaggcaaatctatcaccaacaa |
32639352 |
T |
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