View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_23 (Length: 261)
Name: NF4312_low_23
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 54302970 - 54302728
Alignment:
| Q |
1 |
acatttttctgtaaatgttacggaagcagcaggaagtcatgattgtcatgtataaagtggcgaacggtgctccatatatacaggtttatcnnnnnnnatt |
100 |
Q |
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| T |
54302970 |
acatttttctgtaaatgttacggaagcagcaggaagtcatgattgtcatatataaagtggcgaacgatgctccatatatacaggtttatctttttttatt |
54302871 |
T |
|
| Q |
101 |
ctgaaatcaccctttacttttttcaaaatgtcaagctctaaagttgccatcgtgttaactctttctttacattgaaattgtctgcagattagagaatttg |
200 |
Q |
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| T |
54302870 |
ctgaaatcaccctttacttttttcagaatgtcaagctctaaagttgccatagtgttagctctttctttacattcaaattgtctgcagattagagaatttg |
54302771 |
T |
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| Q |
201 |
ttgcagatcatttggctttaagaggtattgaagtctatattat |
243 |
Q |
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| T |
54302770 |
ttgcggatcatttggctttaagaggtattgaagtccatattat |
54302728 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 31306850 - 31306903
Alignment:
| Q |
179 |
tgtctgcagattagagaatttgttgcagatcatttggctttaagaggtattgaa |
232 |
Q |
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| T |
31306850 |
tgtctgcagattagagattttgttgcagaaaatatggcactaagaggtattgaa |
31306903 |
T |
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