View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4312_low_32 (Length: 213)

Name: NF4312_low_32
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4312_low_32
NF4312_low_32
[»] chr5 (22 HSPs)
chr5 (14-118)||(31643392-31643499)
chr5 (117-211)||(31643884-31643978)
chr5 (117-211)||(31279489-31279583)
chr5 (117-195)||(31281442-31281520)
chr5 (126-181)||(40843336-40843391)
chr5 (117-211)||(31288479-31288573)
chr5 (37-87)||(31643460-31643510)
chr5 (126-195)||(31284726-31284795)
chr5 (126-198)||(31329930-31330002)
chr5 (126-198)||(31378712-31378784)
chr5 (117-197)||(31407417-31407497)
chr5 (126-197)||(31475954-31476025)
chr5 (129-211)||(31332192-31332274)
chr5 (145-194)||(31313256-31313305)
chr5 (144-211)||(31368565-31368632)
chr5 (129-211)||(31317351-31317433)
chr5 (129-211)||(31380977-31381059)
chr5 (145-194)||(31363009-31363058)
chr5 (128-181)||(31416561-31416614)
chr5 (128-181)||(31494138-31494191)
chr5 (147-211)||(31387834-31387898)
chr5 (125-181)||(31463031-31463087)
[»] chr3 (1 HSPs)
chr3 (147-211)||(25708430-25708494)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 31643392 - 31643499
Alignment:
Q  14 gaaggtgaatggaagtcaata---gttacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatcttcatccgagagactattagtat 110  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31643392 gaaggtgaatggaagtcaataatagttacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatcttcatccgagagactagtagtat 31643491  T
Q  111 gttcgtta 118  Q
    ||||||||    
T  31643492 gttcgtta 31643499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 31643884 - 31643978
Alignment:
Q  117 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||    
T  31643884 taaaggaaaatcttcaacagattccaatctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaa 31643978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 31279489 - 31279583
Alignment:
Q  117 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    ||||||||||||||||| | || ||| |||||||| |||||||||||||||||||| |||||||| || |  |||||||||| |  |||||||||    
T  31279489 taaaggaaaatcttcaagaaattccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaa 31279583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 195
Target Start/End: Complemental strand, 31281520 - 31281442
Alignment:
Q  117 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaa 195  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||||||||||| | |||||| || || |||||||    
T  31281520 taaaggaaaatcttcaacaaattccaatctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaa 31281442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 40843336 - 40843391
Alignment:
Q  126 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 181  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||    
T  40843336 atcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcata 40843391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 31288573 - 31288479
Alignment:
Q  117 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    |||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||  ||| ||||  |||| |||||||||| |  |||||||||    
T  31288573 taaaggaaaatcttcaacagattccagtctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaa 31288479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 31643460 - 31643510
Alignment:
Q  37 tacggaatcttcatccgggagactagtagtatgttcgttatctacgaaatc 87  Q
    |||| |||||||||||| ||||||||||||||||||||||| |||||||||    
T  31643460 tacgaaatcttcatccgagagactagtagtatgttcgttatgtacgaaatc 31643510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 31284795 - 31284726
Alignment:
Q  126 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaa 195  Q
    ||||||| ||||| ||| |||||||| |||||||||||||||||||| |||||||| || || |||||||    
T  31284795 atcttcagcagattccagtctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaa 31284726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 31330002 - 31329930
Alignment:
Q  126 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaa 198  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || ||||||||||    
T  31330002 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaa 31329930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 31378784 - 31378712
Alignment:
Q  126 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaa 198  Q
    ||||| |||| || |||||||||||| ||||||||||||||||| || ||||||| ||| || ||||||||||    
T  31378784 atcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaa 31378712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 31407417 - 31407497
Alignment:
Q  117 taaaggaaaatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaaca 197  Q
    ||||| || |||||||||| || ||||| ||||||||||| ||||||||||| ||| |||||||| ||||| | |||||||    
T  31407417 taaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaaca 31407497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 31475954 - 31476025
Alignment:
Q  126 atcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaaca 197  Q
    |||||||||| || ||| | ||||||||||||||| ||||||||||| |||||||| || || |||||||||    
T  31475954 atcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaaca 31476025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 31332274 - 31332192
Alignment:
Q  129 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    ||||||| || ||| |||||||| || ||||||||||||||||| | |||||| || || |||||||||| | ||||||||||    
T  31332274 ttcaacaaattccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaa 31332192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 31313305 - 31313256
Alignment:
Q  145 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtcca 194  Q
    ||||||||||||||||||||||||| || ||||||| |||||| ||||||    
T  31313305 ctccaaatagatagttgaaggaagaacttagagcattgcagagcagtcca 31313256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 31368632 - 31368565
Alignment:
Q  144 tctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    |||||||| |||||||| ||||||||||| | ||||||||| |  |||||||||| | ||||||||||    
T  31368632 tctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaacaagagatgaagcaaa 31368565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 31317433 - 31317351
Alignment:
Q  129 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    ||||||| || ||| |||||||| |||||||| ||||||||||| |  |||||||| |  |||||||||| | ||||||||||    
T  31317433 ttcaacaaattccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaa 31317351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 31381059 - 31380977
Alignment:
Q  129 ttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    ||||||| || ||| |||||||| || || |||||||||||||| | |||||| || || |||||||||| | ||||||||||    
T  31381059 ttcaacaaattccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaa 31380977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 31363058 - 31363009
Alignment:
Q  145 ctccaaatagatagttgaaggaagagctaagagcatagcagagtagtcca 194  Q
    ||||||| ||||||||||||||||| || ||||||| |||||| ||||||    
T  31363058 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtcca 31363009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 31416561 - 31416614
Alignment:
Q  128 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 181  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31416561 cttcaacaaattccaatttccaaatagatggttgaaagaagagcttagagcata 31416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 31494138 - 31494191
Alignment:
Q  128 cttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 181  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||| ||||||||    
T  31494138 cttcaacaaattccaatttccaaatagatggttgaacgaagagcttagagcata 31494191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 31387834 - 31387898
Alignment:
Q  147 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    ||||||||||   |||||||||||||||||||||| || || |||||||||| | ||||| ||||    
T  31387834 ccaaatagatgagtgaaggaagagctaagagcataacaaagcagtccaacaacagatgaaacaaa 31387898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 31463031 - 31463087
Alignment:
Q  125 aatcttcaacagataccaatctccaaatagatagttgaaggaagagctaagagcata 181  Q
    |||||||||||  | ||||| ||||||||||| ||||||||||||||| | ||||||    
T  31463031 aatcttcaacaagttccaatttccaaatagatggttgaaggaagagcttacagcata 31463087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 25708494 - 25708430
Alignment:
Q  147 ccaaatagatagttgaaggaagagctaagagcatagcagagtagtccaacaatatatgaagcaaa 211  Q
    ||||| ||||| || || |||||||| |||||||| |||| |||||||||||||  |||||||||    
T  25708494 ccaaacagataattaaatgaagagctgagagcataacagactagtccaacaatagctgaagcaaa 25708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University