View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_4 (Length: 536)
Name: NF4312_low_4
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 20171482 - 20170978
Alignment:
| Q |
18 |
aaacgaacatagacattaagatggcttgtgattatttccttgttacagtgtaagtgaacctcaaatcaacaaagagtttgtaattgttgccttaaagcag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171482 |
aaacgaacatagacattaagatggcttgtgattatttccttgttacagtgtaagtgaacctcaaatcaacaaagagtttgtaattgttgccttaaagca- |
20171384 |
T |
|
| Q |
118 |
acaaacatatatgattcgttttgggttccttatacattgcaactttgannnnnnngtgcatctattgtagtacttgcatgatgaggtatggtatgccgta |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20171383 |
-caaacatatatgattcgttttgggttccttagacattgcaactttgatttttttgtgcatgtattgtagtacttgcatgatgaggtatggtatgccgta |
20171285 |
T |
|
| Q |
218 |
tggtctggttgagtgttccnnnnnnnngagaccaaaactttaactgcacacattgtttcttaaataatttcattcctacct-atatctctataaaattgc |
316 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20171284 |
tggtctggctgagtgttccttttttt-gagaccaaaactttaactacacacattgtttcttaaataatttcattcctacctcatatctctataaaattgc |
20171186 |
T |
|
| Q |
317 |
atcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatataggctgagaactcctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20171185 |
atcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatataggctgagaactcctt |
20171086 |
T |
|
| Q |
417 |
gttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgttctgtttctccaagatgggtttctctcct |
516 |
Q |
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| T |
20171085 |
gttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgctctgtttctccaagatgggtttctctcct |
20170986 |
T |
|
| Q |
517 |
tgtctctc |
524 |
Q |
| |
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|||||||| |
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| T |
20170985 |
tgtctctc |
20170978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 524
Target Start/End: Complemental strand, 44393192 - 44392688
Alignment:
| Q |
18 |
aaacgaacatagacattaagatggcttgtgattatttccttgttacagtgtaagtgaacctcaaatcaacaaagagtttgtaattgttgccttaaagcag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393192 |
aaacgaacatagacattaagatggcttgtgattatttccttgttacagtgtaagtgaacctcaaatcaacaaagagtttgtaattgttgccttaaagca- |
44393094 |
T |
|
| Q |
118 |
acaaacatatatgattcgttttgggttccttatacattgcaactttgannnnnnngtgcatctattgtagtacttgcatgatgaggtatggtatgccgta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44393093 |
-caaacatatatgattcgttttgggttccttagacattgcaactttgatttttttgtgcatgtattgtagtacttgcatgatgaggtatggtatgccgta |
44392995 |
T |
|
| Q |
218 |
tggtctggttgagtgttccnnnnnnnngagaccaaaactttaactgcacacattgtttcttaaataatttcattcctacct-atatctctataaaattgc |
316 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44392994 |
tggtctggctgagtgttccttttttt-gagaccaaaactttaactacacacattgtttcttaaataatttcattcctacctcatatctctataaaattgc |
44392896 |
T |
|
| Q |
317 |
atcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatataggctgagaactcctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44392895 |
atcgatgtatagagcacatttttcccagttcaagttaaacttccacttcaactttcatcaaactcgaggtgtaatggtttatataggctgagaactcctt |
44392796 |
T |
|
| Q |
417 |
gttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgttctgtttctccaagatgggtttctctcct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44392795 |
gttggagaagcaggacacgtgcaactctgttgtgtctagaatgcttatgccaccgaatcatttgcatgtgctctgtttctccaagatgggtttctctcct |
44392696 |
T |
|
| Q |
517 |
tgtctctc |
524 |
Q |
| |
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|||||||| |
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|
| T |
44392695 |
tgtctctc |
44392688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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