View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_6 (Length: 446)
Name: NF4312_low_6
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_6 |
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| [»] scaffold0455 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 41420056 - 41419629
Alignment:
| Q |
1 |
cttgatggcgaaaatgttgtctgatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacataattttcactagtgga |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
41420056 |
cttgatggcgaaaatgctgtctgatgacgagttcgttaaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacagaattttcaccagtgga |
41419957 |
T |
|
| Q |
101 |
ttaaccaaagttggaattaattgtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41419956 |
ttaaccaaagttggaattaattgtttacaaagtaacggtggactttttgtgtggatggatttgagaggacttcttaaggaagctacatttgaatcagaat |
41419857 |
T |
|
| Q |
201 |
tggaactatgaagagtgattattcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgc |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419856 |
tggaactatggagagtgattattcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgc |
41419757 |
T |
|
| Q |
301 |
taacatggatgatagagatgtgcaaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatggtgtctgagaagaacactaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41419756 |
taacatggatgatagagatgtgcaaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatggtgtctgagaagaacactaaa |
41419657 |
T |
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| Q |
401 |
ccttgttggcatagtaatttgaggttaa |
428 |
Q |
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| T |
41419656 |
ccttgttggcatagtaatttgaggttaa |
41419629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 8518 - 8163
Alignment:
| Q |
23 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacataattttcactagtggattaaccaaagttggaattaatt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8518 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaattttcactagtggattaaccaaagttggaattaatt |
8419 |
T |
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| Q |
123 |
gtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaattggaactatgaagagtgattat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8418 |
gtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaattggaactatggagagtgattat |
8319 |
T |
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| Q |
223 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagagatgtg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8318 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagaaatgtg |
8219 |
T |
|
| Q |
323 |
caaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatg |
379 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
8218 |
aaaatttctttacaaaggattaggtcatttgtggttcaaaat-ataaggaggttatg |
8163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 28129931 - 28129576
Alignment:
| Q |
23 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacataattttcactagtggattaaccaaagttggaattaatt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28129931 |
gatgacgagttcgttgaaaagtttcttactgaaagtgcaaagaggttagcacaaaggtacaaaattttcactagtggattaaccaaagttggaattaatt |
28129832 |
T |
|
| Q |
123 |
gtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaattggaactatgaagagtgattat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28129831 |
gtttacaaagtaacggtggactttttgtgtggatggatctgagaggacttcttaaggaagctacatttgaatcagaattggaactatggagagtgattat |
28129732 |
T |
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| Q |
223 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagagatgtg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28129731 |
tcacgaagttaagattaatgtttcacctggtgtttcttttcattgttctgagccagggtggtttagagtgtgttatgctaacatggatgatagaaatgtg |
28129632 |
T |
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| Q |
323 |
caaattgctttacaaaggattaggtcatttgtggttcagaataataaggaggttatg |
379 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
28129631 |
aaaatttctttacaaaggattaggtcatttgtggttcaaaat-ataaggaggttatg |
28129576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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