View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4312_low_7 (Length: 425)

Name: NF4312_low_7
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4312_low_7
NF4312_low_7
[»] chr5 (7 HSPs)
chr5 (16-408)||(41079867-41080259)
chr5 (19-181)||(41091445-41091606)
chr5 (19-167)||(41101559-41101708)
chr5 (297-342)||(28094137-28094182)
chr5 (297-343)||(22088112-22088158)
chr5 (306-347)||(11744227-11744268)
chr5 (308-348)||(4248037-4248077)
[»] chr3 (6 HSPs)
chr3 (292-343)||(35696471-35696522)
chr3 (297-402)||(5404382-5404487)
chr3 (308-402)||(34199146-34199240)
chr3 (297-354)||(28562134-28562190)
chr3 (292-326)||(32324674-32324708)
chr3 (311-367)||(35936425-35936482)
[»] chr7 (4 HSPs)
chr7 (308-401)||(25296815-25296909)
chr7 (297-355)||(28701321-28701379)
chr7 (297-334)||(24978719-24978756)
chr7 (297-334)||(35818655-35818692)
[»] chr4 (6 HSPs)
chr4 (297-344)||(4299370-4299417)
chr4 (309-348)||(14949659-14949698)
chr4 (300-335)||(32379032-32379067)
chr4 (314-408)||(31380373-31380467)
chr4 (307-363)||(4935973-4936028)
chr4 (306-370)||(5950076-5950140)
[»] chr8 (4 HSPs)
chr8 (297-390)||(13126331-13126425)
chr8 (297-341)||(13264391-13264435)
chr8 (308-341)||(13350228-13350261)
chr8 (311-343)||(19165556-19165588)
[»] chr6 (2 HSPs)
chr6 (297-342)||(6614399-6614444)
chr6 (293-354)||(7318682-7318743)
[»] chr1 (4 HSPs)
chr1 (302-346)||(41018988-41019032)
chr1 (297-328)||(1315382-1315413)
chr1 (308-349)||(8836786-8836827)
chr1 (308-344)||(32173032-32173068)
[»] scaffold1308 (1 HSPs)
scaffold1308 (300-351)||(119-170)
[»] chr2 (2 HSPs)
chr2 (300-351)||(25103366-25103417)
chr2 (300-334)||(21785175-21785209)


Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 41080259 - 41079867
Alignment:
Q  16 atgaactagctgacccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080259 atgaactagctgacccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaaga 41080160  T
Q  116 ggggatatttaatataacatatttgttgcatttatgttccaactgttttatatagttagtttaatttcaggttcaggtactacttgtcatataaaagaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080159 ggggatatttaatataacatatttgttgcatttatgttctaactgttttatatagttagtttaatttcaggttcaggtactacttgtcatataaaagaaa 41080060  T
Q  216 catatagacctcttgatgnnnnnnnattgtattttgaaaataacgagatatatttatcactaaaataagaaacaaacaacgaagtgattggactcaagtg 315  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080059 catatagacctcttgatgtttttttattgtattttgaaaataacgagatatatttatcactaaaataagaaacaaacaacgaagtgattggactcaagtg 41079960  T
Q  316 gttaatgagctccaccaaaagacgaatcgttcaaaagaacaaaatttgattcctgcgtggaacagttcttggtcagactttacttacatcatg 408  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41079959 gttaatgagctccatcaaaagacgaatcgttcaaaagaacaaaatttgattcctgcgtggaacagttcttggtcagactttacttacatcatg 41079867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 41091606 - 41091445
Alignment:
Q  19 aactagctgacccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaacatatatcttccaacttaaga-gg 117  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||| |  ||||||||||||||||||| ||| ||    
T  41091606 aactagctgacccattgaaaaaagcactacctaaaatccctattctgcatctcatttccaagttggggatttcaaacatatatcttccaacttgagaggg 41091507  T
Q  118 ggatatttaatataacatatttgttgcatttatgttccaactgttttatatagttagtttaatt 181  Q
    ||||||| ||||||||| ||||||||||||||||||   |||||||  ||||||||||||||||    
T  41091506 ggatattgaatataacaaatttgttgcatttatgttatcactgttt--tatagttagtttaatt 41091445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 41101708 - 41101559
Alignment:
Q  19 aactagctgacccattgacaaaagcactacctaaaatcccttttcagcatctcatttcctagttggggatattgaaca-tatatcttccaacttaagagg 117  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| |||| |||||||||| |||||    
T  41101708 aactagcttacccattgaaaaaagcactacc-aaaatcccttttcagcatctcatttccaagttggagatattgaacattataccttccaacttgagagg 41101610  T
Q  118 -ggatatttaatataacatatttgttgcatttatgttccaactgttttata 167  Q
     ||||||| ||||||||| |||| |||||||||||||   |||||||||||    
T  41101609 aggatattgaatataacaaatttcttgcatttatgttattactgttttata 41101559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 28094137 - 28094182
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaat 342  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||||    
T  28094137 aagtaattgggctcaagtggttaatgagctccaccaaatgacgaat 28094182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 22088112 - 22088158
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaatc 343  Q
    |||||||| ||||||||||||||||||||||| ||||| ||| ||||    
T  22088112 aagtgattagactcaagtggttaatgagctcccccaaaggacaaatc 22088158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 11744268 - 11744227
Alignment:
Q  306 gactcaagtggttaatgagctccaccaaaagacgaatcgttc 347  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||    
T  11744268 gactcaagtggttaatgagttccaccaaaggacaaatcgttc 11744227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 4248037 - 4248077
Alignment:
Q  308 ctcaagtggttaatgagctccaccaaaagacgaatcgttca 348  Q
    ||||||||||||||||||||||| |||||| |||| |||||    
T  4248037 ctcaagtggttaatgagctccactaaaagatgaattgttca 4248077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 35696471 - 35696522
Alignment:
Q  292 caacgaagtgattggactcaagtggttaatgagctccaccaaaagacgaatc 343  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  35696471 caaccaagtgattgggctcaagtggttaatgagctccaccaaaagacgaatc 35696522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 5404382 - 5404487
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaac-aaaatttgattcctgcgtggaacagttcttggtcagactt 395  Q
    |||||||||| ||||||||||||||||||||| ||  | ||||||| ||||| ||||||  || |||||||||||   |||||| || |||| |||||||    
T  5404382 aagtgattgggctcaagtggttaatgagctcctcc-tatgacgaatagttcagaagaactcaagtttgattcctgatgggaacaattattggccagactt 5404480  T
Q  396 tacttac 402  Q
    |||||||    
T  5404481 tacttac 5404487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 402
Target Start/End: Complemental strand, 34199240 - 34199146
Alignment:
Q  308 ctcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaacaaaatttgattcctgcgtggaacagttcttggtcagactttacttac 402  Q
    ||||||| ||||||||||||||||||| |||||||||||    |||||   ||| |||||||| |||||||| ||||||| |||  |||||||||    
T  34199240 ctcaagtagttaatgagctccaccaaaggacgaatcgtttgggagaactcgattcgattcctgtgtggaacaattcttggccaggatttacttac 34199146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 28562190 - 28562134
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaa 354  Q
    |||| |||||||||||||||||||||||||||||| || ||||||| ||||| |||||    
T  28562190 aagtaattggactcaagtggttaatgagctccacc-aatgacgaattgttcataagaa 28562134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 32324708 - 32324674
Alignment:
Q  292 caacgaagtgattggactcaagtggttaatgagct 326  Q
    |||| ||||||||||||||||||||||||||||||    
T  32324708 caaccaagtgattggactcaagtggttaatgagct 32324674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 35936425 - 35936482
Alignment:
Q  311 aagtggttaatgagctccaccaaaagacgaatcgttc-aaaagaacaaaatttgattc 367  Q
    |||||||||||||| ||||||||| |||||||||||| |||| | | |||||||||||    
T  35936425 aagtggttaatgagttccaccaaatgacgaatcgttcgaaaaaatctaaatttgattc 35936482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 401
Target Start/End: Complemental strand, 25296909 - 25296815
Alignment:
Q  308 ctcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaac-aaaatttgattcctgcgtggaacagttcttggtcagactttactta 401  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||   | ||||||||||  |||||||| ||||||| |||||| ||||||    
T  25296909 ctcaagtggttaatgagctccaccaaaggacgaatcgttcaggagaacttgagtttgattcctcggtggaacaattcttggccagactatactta 25296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 28701379 - 28701321
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaac 355  Q
    |||||||||| ||||| |||||||| ||||||||  || |||||||||||||| |||||    
T  28701379 aagtgattgggctcaaatggttaataagctccacataaggacgaatcgttcaacagaac 28701321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 24978719 - 24978756
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaa 334  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  24978719 aagtgattgggctcaagtggttaatgagttccaccaaa 24978756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 35818692 - 35818655
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaa 334  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  35818692 aagtgattgaactcaagtggttaatgagttccaccaaa 35818655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 344
Target Start/End: Original strand, 4299370 - 4299417
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaatcg 344  Q
    |||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  4299370 aagtgattgggctcaagtggttaatgagcttcaccaaaggacgaatcg 4299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 14949698 - 14949659
Alignment:
Q  309 tcaagtggttaatgagctccaccaaaagacgaatcgttca 348  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  14949698 tcaagtggttaatgagctctatcaaaagacgaatcgttca 14949659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 32379067 - 32379032
Alignment:
Q  300 tgattggactcaagtggttaatgagctccaccaaaa 335  Q
    |||||| |||||||||||||||||||||||||||||    
T  32379067 tgattgtactcaagtggttaatgagctccaccaaaa 32379032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 31380467 - 31380373
Alignment:
Q  314 tggttaatgagctccaccaaaagacgaatcgttcaaaagaacaaaatttgattcctgcgtggaacagttcttggtcagactttacttacatcatg 408  Q
    ||||||||||||||||||||| ||||||| |||||   ||||  | ||||||||||| ||| |||| ||||| || || || ||||||| |||||    
T  31380467 tggttaatgagctccaccaaaggacgaattgttcaggtgaactgagtttgattcctgagtgaaacaattctttgttaggctatacttacctcatg 31380373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 4936028 - 4935973
Alignment:
Q  307 actcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaacaaaatttg 363  Q
    ||||||||||||||||| |||||| |||| |||||| ||||| ||||||| ||||||    
T  4936028 actcaagtggttaatgaactccactaaaa-acgaatggttcagaagaacataatttg 4935973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 5950140 - 5950076
Alignment:
Q  306 gactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaacaaaatttgattcctg 370  Q
    ||||||||||||||||||| | || |||| || |||||||||| |||||| | ||| ||||||||    
T  5950140 gactcaagtggttaatgagattcatcaaatgaagaatcgttcagaagaaccagattcgattcctg 5950076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 13126425 - 13126331
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaa-caaaatttgattcctgcgtggaacagttcttggtca 390  Q
    |||||||||  ||||||||||||||||| | ||||||| |||| ||||||| | |||| | |||||||||||||| | |||||| || |||||||    
T  13126425 aagtgattgagctcaagtggttaatgagtttcaccaaaggacgtatcgttcgagagaacccaaatttgattcctgtgcggaacaatttttggtca 13126331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 13264435 - 13264391
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaa 341  Q
    |||||||| |||||||||| ||||||||||||| |||||||||||    
T  13264435 aagtgattagactcaagtgattaatgagctccaacaaaagacgaa 13264391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 13350228 - 13350261
Alignment:
Q  308 ctcaagtggttaatgagctccaccaaaagacgaa 341  Q
    |||||||||||||||| |||||||||||||||||    
T  13350228 ctcaagtggttaatgaactccaccaaaagacgaa 13350261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 343
Target Start/End: Complemental strand, 19165588 - 19165556
Alignment:
Q  311 aagtggttaatgagctccaccaaaagacgaatc 343  Q
    ||||| |||||||||||||||||||||||||||    
T  19165588 aagtgattaatgagctccaccaaaagacgaatc 19165556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 6614399 - 6614444
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctccaccaaaagacgaat 342  Q
    ||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  6614399 aagtgattggactcaggtggttaattagctccaccaaaagatgaat 6614444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 7318682 - 7318743
Alignment:
Q  293 aacgaagtgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaagaa 354  Q
    |||||| |||||||  | || |||||||||| ||||||||||| |||||||||||| |||||    
T  7318682 aacgaattgattgggtttaaatggttaatgaactccaccaaaacacgaatcgttcagaagaa 7318743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 41019032 - 41018988
Alignment:
Q  302 attggactcaagtggttaatgagctccaccaaaagacgaatcgtt 346  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||    
T  41019032 attggtctcaagtggttaatgagttccactaaaagacgaatcgtt 41018988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 328
Target Start/End: Original strand, 1315382 - 1315413
Alignment:
Q  297 aagtgattggactcaagtggttaatgagctcc 328  Q
    ||||||||||||||||||||||||||||||||    
T  1315382 aagtgattggactcaagtggttaatgagctcc 1315413  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 349
Target Start/End: Complemental strand, 8836827 - 8836786
Alignment:
Q  308 ctcaagtggttaatgagctccaccaaaagacgaatcgttcaa 349  Q
    |||||||||||||||||||  |||||| ||||||||||||||    
T  8836827 ctcaagtggttaatgagctaaaccaaatgacgaatcgttcaa 8836786  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 32173068 - 32173032
Alignment:
Q  308 ctcaagtggttaatgagctccaccaaaagacgaatcg 344  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  32173068 ctcaagtggttaatgagctccgccaaaggacgaatcg 32173032  T

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Target: scaffold1308 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 119 - 170
Alignment:
Q  300 tgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaa 351  Q
    |||||| |||||||| ||||||||| | |||||| |||||||||||||||||    
T  119 tgattgaactcaagtagttaatgagtttcaccaacagacgaatcgttcaaaa 170  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 351
Target Start/End: Complemental strand, 25103417 - 25103366
Alignment:
Q  300 tgattggactcaagtggttaatgagctccaccaaaagacgaatcgttcaaaa 351  Q
    |||||| |||||||| ||||||||| | |||||| |||||||||||||||||    
T  25103417 tgattgaactcaagtagttaatgagtttcaccaacagacgaatcgttcaaaa 25103366  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 21785175 - 21785209
Alignment:
Q  300 tgattggactcaagtggttaatgagctccaccaaa 334  Q
    ||||||| |||||||||||||||||||||||||||    
T  21785175 tgattgggctcaagtggttaatgagctccaccaaa 21785209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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