View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4312_low_9 (Length: 405)
Name: NF4312_low_9
Description: NF4312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4312_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 30491012 - 30491380
Alignment:
| Q |
18 |
atctttaggttgtacttccatgaagtttaagattgaaactttttcaaaaaataaataattaaagttattaattccctttgcattggatgatcatctattc |
117 |
Q |
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| T |
30491012 |
atctttaggttgtacttccatgaagtttaagattgaaactttttcaaaaaataaataattaaagttattaattccctttgcattggatgatcatctattc |
30491111 |
T |
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| Q |
118 |
tctttgttgcttgagaaataaaaatgatgtgaaatatatctcgtgcatgtttggattcatgttgaggttgtcaaaattatgatggactatcacaattttt |
217 |
Q |
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| T |
30491112 |
cctttgttgcttgagaaataaaaatgatgtgaaatatatctcgtgcatgtttggattcatgttgaggttgtcaaaattatgatggactatcacaattttt |
30491211 |
T |
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| Q |
218 |
acaaaagttatactttaaagtttttataaaattaagattaagatggcaccatgattttgacaaacatattgtccatccaaacatacacaatttttgtaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
30491212 |
acaaaagttatactttaaagtttttataaaattaagattaagatggcaccatgattttgacaaacatattgtccatccaaacatacacaattcttgcaat |
30491311 |
T |
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| Q |
318 |
tgttgatattgaattattgatgatggttgaaaacgatttaccaccttattggccgtatataccatagca |
386 |
Q |
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| T |
30491312 |
tgttgatattgaattattgatgatggttgaaaacgattgaccaccttattggccgtatataccatagca |
30491380 |
T |
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