View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4313-Insertion-1 (Length: 66)
Name: NF4313-Insertion-1
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313-Insertion-1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 59; Significance: 9e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 46359827 - 46359769
Alignment:
| Q |
8 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359827 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
46359769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 44461028 - 44460970
Alignment:
| Q |
8 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44461028 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaaga |
44460970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 44468561 - 44468503
Alignment:
| Q |
8 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44468561 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggctttttccaaga |
44468503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 38604374 - 38604429
Alignment:
| Q |
11 |
atggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
66 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
38604374 |
atggtacagcagagcaatgattaacttagaatccttctttctggcttcttccaaga |
38604429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 40179862 - 40179918
Alignment:
| Q |
10 |
tatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
66 |
Q |
| |
|
||||||| ||||||| || |||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
40179862 |
tatggtagagcaaagcaacgattaacttagagtccttctttttggcttcttccaaga |
40179918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 41619797 - 41619739
Alignment:
| Q |
8 |
tgtatggtacagcaaagtaatgattaacttacaatcctgctttttggcttcttccaaga |
66 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
41619797 |
tgtatggtacagtaaagggatgattaacttaaaatggttctttttggcttcttccaaga |
41619739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University