View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313-Insertion-12 (Length: 167)
Name: NF4313-Insertion-12
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313-Insertion-12 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 23663185 - 23663351
Alignment:
| Q |
1 |
gttccaacttatttcaagttctaactcatcacacgtacacacctatcacgtaaaattagatgcaactccattactaactcatcacatcgatttaccatgt |
100 |
Q |
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| T |
23663185 |
gttccaacttatttcaagttctaactcatcacacgtacacacctatcacgtaaaattagatgcaactccattactaactcatcacatcgatttaccatgt |
23663284 |
T |
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| Q |
101 |
agtgtctgcataaatattgtcgtgcagaaaatcttcaaaacccgaagattttacctgggagacgcag |
167 |
Q |
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| T |
23663285 |
agtgtctgcataaatattgtcgtgcagaaaatcttcaaaacccgaagattttacctgggagacgcag |
23663351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 23702720 - 23702650
Alignment:
| Q |
85 |
catcgatttaccatgtagtgtctgcataa-atattgtcgtgcagaaaatcttcaaaacccgaagattttacct |
156 |
Q |
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| T |
23702720 |
catcgatttaccatgtcgtgtctgcataagatattgtcgtgcagaaaat-ttcaaaa-cagaagattttacct |
23702650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 23692961 - 23692997
Alignment:
| Q |
38 |
cacacctatcacgtaaaattagatgcaactccattac |
74 |
Q |
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| T |
23692961 |
cacacctatcacgtaaaattagatgcaactccattac |
23692997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 23702802 - 23702753
Alignment:
| Q |
29 |
tcacacgtacacacctatcacgtaaaattagatgcaactccattactaac |
78 |
Q |
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| T |
23702802 |
tcacacgaacacaattatcacgtaaaattagatgcaactccgttactaac |
23702753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 23745830 - 23745862
Alignment:
| Q |
29 |
tcacacgtacacacctatcacgtaaaattagat |
61 |
Q |
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| T |
23745830 |
tcacacgtacacacctataacgtaaaattagat |
23745862 |
T |
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