View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313-Insertion-14 (Length: 250)
Name: NF4313-Insertion-14
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313-Insertion-14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 32159331 - 32159094
Alignment:
| Q |
14 |
aatcatgaatcatatggttgtcagagggtaaataattgaggaggtagtagtaagttatcggttgaacttgtgaatcat-atg-gtag--tgtttggtttc |
109 |
Q |
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| T |
32159331 |
aatcatgaatcatatgcttgtcagagggcaaataattgaggaggtagta---agttatcggttgaacttgtgagttgtgacgagtggcctgtttggtttc |
32159235 |
T |
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| Q |
110 |
acgctgaaaccaaaattctcgcgtctcaatatccattttaccctgatttattgaagctggacattcaagctttacactaaacgttgttgggagttcaata |
209 |
Q |
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| T |
32159234 |
acgctgaaaccaaaattctcgcgcctcaatatccattttaccgtgatttgatgaagctggacattcaagcttttcactaaacattgttgggagttcaata |
32159135 |
T |
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| Q |
210 |
attgtctattctcaacgttgccttttcacatagagcattat |
250 |
Q |
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| T |
32159134 |
tttgtctattctcaacgttgccttttcacatagagcattat |
32159094 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 15907221 - 15907298
Alignment:
| Q |
114 |
tgaaaccaaaattctcgcgtctcaatatccattttaccctgatttattgaagctggacattcaagctttacactaaac |
191 |
Q |
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| T |
15907221 |
tgaaacaaagattcttgcgttccaatgtccattttaccatgatttgctgaagctggatattcaagcttttcactaaac |
15907298 |
T |
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