View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313-Insertion-3 (Length: 309)
Name: NF4313-Insertion-3
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 36792079 - 36792381
Alignment:
| Q |
7 |
tttacagctatcagagacatagttactgttttcggagacgtaggcactgttggacgaacatagtgattgattaatttgtcttctttatcggttttactaa |
106 |
Q |
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| T |
36792079 |
tttacagctatcagagacatagtaactgttttcggagacgtaggcacagttggacgaacatagtgattaattaatttgtcttctttatcggttttactaa |
36792178 |
T |
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| Q |
107 |
tgttcgaaccttatgtacgtgacatcaagttatcaatgtattgtccgttttgtgtatgtaatctctcctgatttggtcatttttaaatggcactttgatg |
206 |
Q |
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| T |
36792179 |
tgttcgaaccttatgtacgtgacatcaagttatcaatgtattgtccgttttgtgtatgtaatctcttctgatttggtcatttttaaatgtcactttgatg |
36792278 |
T |
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| Q |
207 |
gatagcgaccaaagtgtgttttgtctataaactttcatcaacctcgattctcaaatagtagcccccgagtcaaagttaaagggatatagagcatgtcatc |
306 |
Q |
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| T |
36792279 |
aatagcgaccagagtgtgtgttgtctataaactttcatcaacctcgattctcaaatagtagctcccgagtcaaagttaaagggatatagagcatgtcatc |
36792378 |
T |
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| Q |
307 |
cct |
309 |
Q |
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||| |
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| T |
36792379 |
cct |
36792381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 36784073 - 36784123
Alignment:
| Q |
161 |
tatgtaatctctcctgatttggtcatttttaaatggcactttgatggatag |
211 |
Q |
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| T |
36784073 |
tatgtaaactcttctgatttgatcctttttaaaaggcactttgatggatag |
36784123 |
T |
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