View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313_high_8 (Length: 243)
Name: NF4313_high_8
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44817374 - 44817133
Alignment:
| Q |
1 |
ttcttctgtgaactaaacccatcaagtacttttgcaagttcatcccaatattcaccatcactagcttcaatatcaaaatcgattccatccaaaacagcat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
44817374 |
ttcttctgtgaactaaacccatcaagtgcttttgcaagttcatcccaatattgaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcat |
44817275 |
T |
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| Q |
101 |
cacctaatggtcttgaagatgatgtgccacccaaaaagttgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||| |
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| T |
44817274 |
cacctaatggtcttgaagatgatgtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttcc |
44817175 |
T |
|
| Q |
201 |
aacgccgcctcggatagagagcaacactttgattcctttgct |
242 |
Q |
| |
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| ||| |||| ||||||||||||||||||||| |||||||| |
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| T |
44817174 |
agtgccacctccgatagagagcaacactttgatgcctttgct |
44817133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 44834669 - 44834490
Alignment:
| Q |
63 |
agcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccataggtagtttgcaagc |
162 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||||| | |
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| T |
44834669 |
agcttcaatatcaaaatcaattccatccaaaacagcatcacctaaaggtcttgaagatgacgtgccacccaagaaattgttccataggtaatttgcaacc |
44834570 |
T |
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| Q |
163 |
tgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgcctcggatagagagcaacactttgattcctttgct |
242 |
Q |
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| T |
44834569 |
tgcgtggcatcatcagctgaggaaagagagtagcttccggcaccacctccgagagatagcaacactttgatgcctttgct |
44834490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 44838142 - 44838060
Alignment:
| Q |
66 |
ttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccata |
148 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||||| |
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| T |
44838142 |
ttcaatatcaaaatctattccatctaaaacagcatcacctaatggtcttgaagatgacttgccacccaagaaagtgttccata |
44838060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 44849229 - 44849147
Alignment:
| Q |
66 |
ttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttccata |
148 |
Q |
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| T |
44849229 |
ttcaatgtcaaaatctatgccatctaacacagcatcaccaaatggtcttgaatatgacgtgccacccaagaaagtgttccata |
44849147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 17570951 - 17571171
Alignment:
| Q |
22 |
tcaagtacttttgcaagttcatcccaatattcaccatcactagcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatg |
121 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17570951 |
tcaagtgcttttgcaagttcatcccaatgttcaccatcaccagcttcaatatcaaaatcaattccatccaaaacagcatcacctaatggtcttgaagatg |
17571050 |
T |
|
| Q |
122 |
atgtgccacccaaaaagttgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgcctcggatagagag |
221 |
Q |
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| T |
17571051 |
atgtgccacccaagaaattgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgccttcgataaagag |
17571150 |
T |
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| Q |
222 |
caacactttgattcctttgct |
242 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
17571151 |
caacactttgatgcctttgct |
17571171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 23396494 - 23396543
Alignment:
| Q |
29 |
cttttgcaagttcatcccaatattcaccatcactagcttcaatatcaaaa |
78 |
Q |
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|||||||||||||||||||||||| |||||||| | |||||||||||||| |
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| T |
23396494 |
cttttgcaagttcatcccaatattgaccatcaccaacttcaatatcaaaa |
23396543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 48222502 - 48222567
Alignment:
| Q |
51 |
ttcaccatcactagcttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttga |
116 |
Q |
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| T |
48222502 |
ttcaccaccaccaacttcaatgtcaaaatctacaccatccaacacaacatcacctaatggtcttga |
48222567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 43901341 - 43901261
Alignment:
| Q |
66 |
ttcaatatcaaaatcgattccatccaaaacagcatcacctaatggtcttgaagatgatgtgccacccaaaaagttgttcca |
146 |
Q |
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||||||||||||||| || ||||| || | |||||| || ||||| | ||||||||| | ||||||||||| |||||||| |
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| T |
43901341 |
ttcaatatcaaaatcaataccatctaatatagcatcgccaaatggacgtgaagatgaatttccacccaaaaacttgttcca |
43901261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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