View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313_low_1 (Length: 479)
Name: NF4313_low_1
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 40863481 - 40863680
Alignment:
| Q |
12 |
taatactagtaattgatctcaagtcagaagcagcaataggaaggcaataccaacattagcctttcaaagacataacgactgttagaacatcatatgttaa |
111 |
Q |
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| T |
40863481 |
taatactagtaattgatctcaagtcagaagcagcaataggaaggcaataccaacattagcctttcaaagacataacgactgttagaacatcatatgttaa |
40863580 |
T |
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| Q |
112 |
ggactatcaaaagtcaaccacaaagaaagagaagagagttatatataaattatagaaaatggaacatctcaggggaacaattgaaatttcaaaatctcta |
211 |
Q |
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| T |
40863581 |
ggactatcaaaagtcaaccagaaagaaagagaagagagttatatataaattatagaaaatggaacatctcaggggaacaattgaaatttcaaaatctcta |
40863680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 314 - 463
Target Start/End: Original strand, 40863922 - 40864071
Alignment:
| Q |
314 |
tttgtatttgctggtagtttgttggattcttttatatgttttattctactaggacagataggctttaagtatttaacatgattttcaatccttttcttag |
413 |
Q |
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| T |
40863922 |
tttgtatttgctggtagtttgttagattcttttatatgttttattctactaggacagataggctttaagtatttaacatgattttcaatccttttcttag |
40864021 |
T |
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| Q |
414 |
tcctgcgtgtaattttctacatggtaatttttatgaagttgtttgattac |
463 |
Q |
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| T |
40864022 |
tcctgcgtgtaattttctacatggtaatttttatgaagttgtttgattac |
40864071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 40863780 - 40863890
Alignment:
| Q |
202 |
aaaatctctatgttgtagtttgctttggccatattcaaccacatttattgggaaaaacttctcaatttggactttgttgcatctcttttgatcttatgtg |
301 |
Q |
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| T |
40863780 |
aaaatttctatgttgtagtttgctttggccatattcaaccacatttattgggaaaaacttctcaatttggactttgttgcatctcttttgattttatgtg |
40863879 |
T |
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| Q |
302 |
ttgttttcaat |
312 |
Q |
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| T |
40863880 |
ttgttttcaat |
40863890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 42845784 - 42845745
Alignment:
| Q |
386 |
ttaacatgattttcaatccttttcttagtcctgcgtgtaa |
425 |
Q |
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| T |
42845784 |
ttaacatgattttcaatccttttcttagtactgcctgtaa |
42845745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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