View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313_low_10 (Length: 237)
Name: NF4313_low_10
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2687839 - 2688059
Alignment:
| Q |
1 |
ataggcgtaacatccaccccgcaaacacaagtttgcctcaaccgaaaatgatacaacaaaacaagcaccagaatacaaaaccaaacagcaaggcaaatgc |
100 |
Q |
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| T |
2687839 |
ataggcgtaacatccaccatgcaaacacaagtttgcctcaaccgaaaatgatacaacaaaacaagcaccagaatacaaaaccaaacagcaaggcaaatgc |
2687938 |
T |
|
| Q |
101 |
tatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatctcccaaaaccgaacagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2687939 |
tatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatctcccaaaaccaaacagc |
2688038 |
T |
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| Q |
201 |
ggctccagaagccaaaaaacc |
221 |
Q |
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|||||||||||||||||||| |
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| T |
2688039 |
agctccagaagccaaaaaacc |
2688059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 52421986 - 52422091
Alignment:
| Q |
85 |
acagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtcccagcacatct |
184 |
Q |
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| T |
52421986 |
acagcaaggcaacagctatgggtctgaaatctaataaaactaaccaaaattcaagcccctagctatgcctaaaccaacccgcaacagccccatcacagct |
52422085 |
T |
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| Q |
185 |
cccaaa |
190 |
Q |
| |
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|||||| |
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| T |
52422086 |
cccaaa |
52422091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 42851708 - 42851821
Alignment:
| Q |
77 |
aaaaccaaacagcaaggcaaatgctatgggtctgaaatctaataaatcacatcaaaattcaagcccctagcgatccctaaaccaacccgaaacagtccca |
176 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||| | | |||||||||||| |||||| || |||||||||||||| ||||| |||| |
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| T |
42851708 |
aaaaccaatcagcaaggcaacaactatgggtctgaaatctaataaaactaaccaaaattcaagctcctagctatgcctaaaccaacccgcaacagcccca |
42851807 |
T |
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| Q |
177 |
gcacatctcccaaa |
190 |
Q |
| |
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|||| |||||||| |
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| T |
42851808 |
tcacagctcccaaa |
42851821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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