View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4313_low_3 (Length: 417)
Name: NF4313_low_3
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4313_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 417
Target Start/End: Original strand, 2687178 - 2687583
Alignment:
| Q |
12 |
atgaaactatatatggtcatgcaggtatgacaccagcttataagcttttggagatgtacaacaagaagtggggaaacaacattgatcctgtgtttagaga |
111 |
Q |
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| T |
2687178 |
atgaaactatatatggtcatgcaggtatgacaccagctgataagcttttggagatgtacaacaagaagtggggaagcaacattgatcctgtgtttagaga |
2687277 |
T |
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| Q |
112 |
gtgttgctactgagctgaattcgttttaagatggagaatcggagatagctttatatgtgtttgtttattaataatttttggaatctttcaactttcaagc |
211 |
Q |
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| T |
2687278 |
gtgttgctactgagctgaattcgttttaagatggagaatcggagatagctttatatgtgtttgtttattaataatttttggaatctttcaactttcaagc |
2687377 |
T |
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| Q |
212 |
cctatgtgtaccatcgattataaaatcttgatatgtgcataagtcctatcttaattgacaaaaatgttaagttgattgaaatttaaactacaactttttt |
311 |
Q |
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| T |
2687378 |
cctatgtgtaccatcgattataaaatcttgatatgtgtataagtcctatcttaattgacaaaaatgttaaattgattgaaatttaaactacaactttttt |
2687477 |
T |
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| Q |
312 |
atttgtgtatgtgaattttcaatgactattgtcattttgtctatatagtagttagttgttagattaannnnnnnnnnnngtttaaatttaaatcatgact |
411 |
Q |
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| T |
2687478 |
atttgtgtatgtgaattttcaatgactattatcattttgtctatatagtagttagttgttagattaatttttcttttttgtttaaatttaaatcatgact |
2687577 |
T |
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| Q |
412 |
tccaac |
417 |
Q |
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| T |
2687578 |
tccaac |
2687583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 2694217 - 2694308
Alignment:
| Q |
33 |
caggtatgacaccagcttataagcttttggagatgtacaacaagaagtggggaaacaacattgatcctgtgtttagagagtgttgctactga |
124 |
Q |
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| T |
2694217 |
caggtatgacaccggctgaaaagcttttggagatgtacaataacaagtggggaagcaacatagattctgtgtttagagagtgttgctactga |
2694308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 37146268 - 37146321
Alignment:
| Q |
302 |
caacttttttatttgtgtatgtgaattttcaatgactattgtcattttgtctat |
355 |
Q |
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| T |
37146268 |
caactttttcacttatgtaagtgaattttcaattactattgtcattttgtctat |
37146321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 355
Target Start/End: Complemental strand, 10828541 - 10828513
Alignment:
| Q |
327 |
ttttcaatgactattgtcattttgtctat |
355 |
Q |
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| T |
10828541 |
ttttcaatgactattgtcattttgtctat |
10828513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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