View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4313_low_4 (Length: 379)

Name: NF4313_low_4
Description: NF4313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4313_low_4
NF4313_low_4
[»] chr2 (17 HSPs)
chr2 (78-259)||(35734525-35734706)
chr2 (78-259)||(10355624-10355805)
chr2 (78-259)||(16254926-16255107)
chr2 (82-259)||(28808682-28808864)
chr2 (56-259)||(7759303-7759522)
chr2 (56-259)||(34210347-34210560)
chr2 (85-257)||(16256139-16256321)
chr2 (78-259)||(43589809-43590000)
chr2 (319-373)||(10355864-10355918)
chr2 (319-373)||(16255167-16255221)
chr2 (319-373)||(35734411-35734465)
chr2 (319-373)||(28808923-28808977)
chr2 (327-373)||(7759071-7759117)
chr2 (327-369)||(7759119-7759161)
chr2 (327-370)||(7759202-7759245)
chr2 (320-359)||(16256384-16256423)
chr2 (172-243)||(35851671-35851742)
[»] chr1 (28 HSPs)
chr1 (83-259)||(49622841-49623016)
chr1 (85-259)||(15544441-15544615)
chr1 (86-257)||(46833179-46833352)
chr1 (78-259)||(29743408-29743599)
chr1 (78-259)||(11376619-11376810)
chr1 (56-259)||(42886646-42886864)
chr1 (78-259)||(51621791-51621972)
chr1 (78-259)||(44565005-44565196)
chr1 (132-259)||(261672-261798)
chr1 (78-259)||(2326768-2326959)
chr1 (319-373)||(49622727-49622781)
chr1 (319-373)||(261558-261612)
chr1 (319-373)||(2326655-2326709)
chr1 (319-373)||(15544675-15544729)
chr1 (319-373)||(44565256-44565310)
chr1 (319-373)||(51621678-51621732)
chr1 (78-141)||(21374002-21374065)
chr1 (319-373)||(11376870-11376924)
chr1 (320-373)||(29743658-29743711)
chr1 (319-373)||(46833445-46833499)
chr1 (172-259)||(37661901-37661989)
chr1 (144-259)||(33505744-33505859)
chr1 (327-370)||(42886921-42886964)
chr1 (206-259)||(15429337-15429390)
chr1 (56-90)||(11376582-11376616)
chr1 (56-90)||(21374068-21374102)
chr1 (20-53)||(49623081-49623114)
chr1 (56-100)||(25700306-25700350)
[»] chr6 (8 HSPs)
chr6 (75-259)||(18227319-18227503)
chr6 (146-257)||(20219057-20219168)
chr6 (146-257)||(22113082-22113193)
chr6 (78-259)||(11455106-11455297)
chr6 (327-373)||(20219243-20219289)
chr6 (327-373)||(22113268-22113314)
chr6 (95-195)||(17508420-17508520)
chr6 (319-362)||(18227562-18227605)
[»] scaffold0470 (1 HSPs)
scaffold0470 (78-259)||(60-251)
[»] chr8 (14 HSPs)
chr8 (78-259)||(6610772-6610963)
chr8 (136-259)||(43633687-43633808)
chr8 (78-257)||(2955918-2956107)
chr8 (132-257)||(36557098-36557223)
chr8 (78-256)||(40977542-40977725)
chr8 (54-138)||(22976388-22976472)
chr8 (132-259)||(21595150-21595277)
chr8 (320-373)||(6610658-6610711)
chr8 (319-370)||(43633868-43633919)
chr8 (78-138)||(43047901-43047961)
chr8 (160-259)||(43047984-43048083)
chr8 (173-259)||(22976474-22976560)
chr8 (56-96)||(36557047-36557087)
chr8 (328-360)||(27424325-27424357)
[»] chr7 (10 HSPs)
chr7 (87-259)||(29008622-29008804)
chr7 (78-259)||(12313887-12314068)
chr7 (78-259)||(1827889-1828080)
chr7 (78-257)||(47645423-47645612)
chr7 (82-259)||(33118636-33118828)
chr7 (56-258)||(44119040-44119256)
chr7 (323-373)||(29008509-29008559)
chr7 (85-140)||(40461283-40461338)
chr7 (327-373)||(42027803-42027849)
chr7 (327-363)||(40040517-40040553)
[»] chr4 (26 HSPs)
chr4 (85-259)||(38024524-38024708)
chr4 (56-259)||(6885015-6885234)
chr4 (87-259)||(29118913-29119085)
chr4 (132-259)||(37563788-37563915)
chr4 (78-259)||(49284074-49284259)
chr4 (94-259)||(55873512-55873687)
chr4 (132-259)||(29191025-29191151)
chr4 (59-150)||(54975749-54975840)
chr4 (183-259)||(54975830-54975906)
chr4 (78-257)||(42739582-42739771)
chr4 (78-259)||(1921145-1921336)
chr4 (78-259)||(22443731-22443922)
chr4 (134-257)||(47497566-47497690)
chr4 (319-373)||(29191204-29191258)
chr4 (319-373)||(54975965-54976019)
chr4 (144-259)||(41279202-41279317)
chr4 (319-370)||(38024414-38024465)
chr4 (177-245)||(8067199-8067268)
chr4 (90-257)||(39593207-39593379)
chr4 (327-373)||(6884912-6884958)
chr4 (319-373)||(37563973-37564027)
chr4 (78-141)||(30548051-30548114)
chr4 (327-373)||(55873758-55873804)
chr4 (56-90)||(22443925-22443959)
chr4 (56-90)||(38024718-38024752)
chr4 (56-90)||(42739774-42739808)
[»] chr5 (11 HSPs)
chr5 (86-253)||(30411399-30411577)
chr5 (93-259)||(35384171-35384347)
chr5 (78-259)||(1751295-1751486)
chr5 (78-251)||(11726579-11726762)
chr5 (78-259)||(10329701-10329894)
chr5 (78-259)||(37275944-37276135)
chr5 (319-373)||(35384406-35384460)
chr5 (319-373)||(30411279-30411333)
chr5 (172-259)||(37275249-37275336)
chr5 (78-141)||(37275334-37275397)
chr5 (58-96)||(25595631-25595669)
[»] scaffold0155 (1 HSPs)
scaffold0155 (80-257)||(27987-28174)
[»] chr3 (3 HSPs)
chr3 (78-259)||(46485484-46485675)
chr3 (142-243)||(7311392-7311490)
chr3 (56-90)||(46485678-46485712)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 35734706 - 35734525
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataaggga 177  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||    
T  35734706 ggaggggagggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagggattttaattaaatatgtgtttggttcataaggga 35734607  T
Q  178 aggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35734606 aggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 35734525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 10355624 - 10355805
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataaggga 177  Q
    |||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||     
T  10355624 ggagggaagggaaggggaaatatatcaattaaatatatgtttggttcaaatgatgggagggaagagattttaattaaatatgtgtttggttcataagggg 10355723  T
Q  178 aggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10355724 aggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 10355805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 16254926 - 16255107
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataaggga 177  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||| ||||||||||||| || ||||||||    
T  16254926 ggaggggagggaagggaagatatatcaattaaatatatgtttggttcaaataatgggagggaagggattttaattaaatatgtgtttggttcataaggga 16255025  T
Q  178 aggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  16255026 aggggagggattttaaaaccaaattacttttttatccctctaaccttgaaacaatatcaagatctttatattattcacttca 16255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 28808682 - 28808864
Alignment:
Q  82 gggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttata-----aggg 176  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| || |||     ||||    
T  28808682 gggagggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagatattttaattaaatatgtgtttggttcataaggggaggg 28808781  T
Q  177 aaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
     ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28808782 gaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 28808864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 7759522 - 7759303
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa-----ggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa---------- 140  Q
    |||||||||||| ||||||||||||||||||||||     ||||||||||||||||||||||||| |||| |||||||||||||||||||              
T  7759522 aggggaggggaggggttttaatggaggggagggaaaggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaatgggagggaa 7759423  T
Q  141 gagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaatta-cttttttctccctctaaccttaaaacaatatcatga 239  Q
    ||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  7759422 gagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattattttttttatccctctaaccttaaaacaatatcatga 7759323  T
Q  240 tttttatattattcacttca 259  Q
    ||||||||||||||||||||    
T  7759322 tttttatattattcacttca 7759303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 34210560 - 34210347
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgat----------gggagggaagagat 145  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||          ||||||| || |||    
T  34210560 aggggaggggaggagttttaatggaggggagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggggaggggaggggagggat 34210461  T
Q  146 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattttta 245  Q
    ||||||||||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | |||||  |||||||    
T  34210460 tttaatcaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatagtatcacaattttta 34210361  T
Q  246 tattattcacttca 259  Q
     |||||||||||||    
T  34210360 aattattcacttca 34210347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 16256139 - 16256321
Alignment:
Q  85 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgatttataag 174  Q
    ||||||||| |||||| |||||||||||||| |||| |||||||||||||||||||| |          ||||||||||||||| ||||||||| | |||    
T  16256139 agggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggagggaaggggaggggagggattttaatcaaatatatgtttgattcacaag 16256238  T
Q  175 ggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcactt 257  Q
    || ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| | ||||| |||||||| |||||||||||    
T  16256239 gggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatagtatcacgatttttaaattattcactt 16256321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 43590000 - 43589809
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| |||||||||||||||| | |||||||||||| |||| |||||||||||||||||||| |          ||||||||||||||  |||||| |    
T  43590000 ggagggaagggaaggggagatattttaattaaatatatgtttggttcaaatgatgggagggaaggggaggggaggaattttaatcaaatacatgtttggt 43589901  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | | ||||| |||  || ||||||||||| ||||||||||||| |||||||||  |||||||| |||||  ||||||| |||||||||||||    
T  43589900 tcacaaggggagggcagagattttaaaactaaattacttttttatccctctaatattaaaacagtatcacaatttttaaattattcacttca 43589809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 10355864 - 10355918
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10355864 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 10355918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 16255167 - 16255221
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16255167 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 16255221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 35734465 - 35734411
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35734465 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 35734411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 28808923 - 28808977
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  28808923 gttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 28808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 7759117 - 7759071
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  7759117 aaaatattaggtattcataaatattagagcacttctaaaataatcta 7759071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 7759161 - 7759119
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataa 369  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  7759161 aaaatattaggtattcataaatattagagcacttctaaaataa 7759119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 370
Target Start/End: Complemental strand, 7759245 - 7759202
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataat 370  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  7759245 aaaatattaggtattcataaatatcagagcacttctaaaataat 7759202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 16256384 - 16256423
Alignment:
Q  320 ttctaacaaaatattaggtattcataaatattagagcact 359  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  16256384 ttctaacaagatattgggtattcataaatattagagcact 16256423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 35851671 - 35851742
Alignment:
Q  172 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 243  Q
    |||||||||  | |||||| || |||||||||||||||| || ||||||  |||||||||| ||||||||||    
T  35851671 aagggaagggaaaggatttcaacaccaaattacttttttatcgctctaatattaaaacaatctcatgatttt 35851742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 83 - 259
Target Start/End: Complemental strand, 49623016 - 49622841
Alignment:
Q  83 ggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggag 182  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||    
T  49623016 ggagggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagaaattttaattaaatatgtgtttggtttataagggaa-gag 49622918  T
Q  183 agggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622917 agggattttaaaaccaaattatttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 49622841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 85 - 259
Target Start/End: Original strand, 15544441 - 15544615
Alignment:
Q  85 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagag 184  Q
    |||||||||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||| ||| |||    
T  15544441 agggaaggggagatatatcaattaaatacatgtttggttcaaatgatgggagggaagggattttaattaaatatgtgtttggttcataaggggaggggag 15544540  T
Q  185 ggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15544541 ggattttaaaaccaaattacctttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 15544615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 86 - 257
Target Start/End: Original strand, 46833179 - 46833352
Alignment:
Q  86 gggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagg 185  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||| ||| || |    
T  46833179 gggaaggggagatatatcaattaaatatatatttggttcaaatgatgggagggaagggattttaattaaatatgtgtttggttcataaggggaggggaag 46833278  T
Q  186 gattttaaaaccaaattac--ttttttctccctctaaccttaaaacaatatcatgatttttatattattcactt 257  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  46833279 gattttaaaaccaaattacttttttttatccctctaaccttaaaacaatatcatgatttttctattattcactt 46833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 29743408 - 29743599
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggag----------ggaagagattttaatcaaatatgtgtttgat 167  Q
    |||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||          ||||| ||||||||| ||||||||||||| |    
T  29743408 ggagggaatggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagagaagggaagggaagggattttaattaaatatgtgtttggt 29743507  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29743508 tcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 29743599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 11376619 - 11376810
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgg----------gagggaagagattttaatcaaatatgtgtttgat 167  Q
    |||||||||| || |||||||||||||||||||||||| |||| ||||||||||||          |||||||||||||||||| ||||||||||||| |    
T  11376619 ggaggggaggaaaagggagatatatcaattaaatatatgtttggttcaaatgatgggagggaatgggagggaagagattttaattaaatatgtgtttggt 11376718  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11376719 tcataaggggaggggagagattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 11376810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 42886646 - 42886864
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaaggg-----gagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag------- 143  Q
    |||||||||||| ||||||||||||||| |||||||||     |||||||||||||||||||||| |||| |||||||||||| ||||||| |           
T  42886646 aggggaggggaggggttttaatggagggaagggaagggaaggggagatatatcaattaaatatatgtttggttcaaatgatggaagggaaggggatggaa 42886745  T
Q  144 ---attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgat 240  Q
       |||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42886746 gggattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgat 42886845  T
Q  241 ttttatattattcacttca 259  Q
    |||||||||||||||||||    
T  42886846 ttttatattattcacttca 42886864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 51621972 - 51621791
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataaggga 177  Q
    |||||| |||||||| ||||||||||||||| |||||| |||| |||||||||||||||| ||  ||||||||| ||||||||||||| || ||||||      
T  51621972 ggagggaagggaaggagagatatatcaattagatatatgtttggttcaaatgatgggaggaaatggattttaattaaatatgtgtttggttcataaggag 51621873  T
Q  178 aggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||| ||| ||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||||||||||    
T  51621872 aggggagagattttaaaaccaaattacttttttatcactgtaatcttaaaacaatatcatgatttttatattattcacttca 51621791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 44565005 - 44565196
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgat 167  Q
    |||||| |||||||||||||||||||||||||||| || |||| |||||||||||||| |||||          |||||| ||| ||||||||||||| |    
T  44565005 ggagggaagggaaggggagatatatcaattaaatacatgtttggttcaaatgatgggaaggaaggggaggaaagagatttcaattaaatatgtgtttggt 44565104  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||||||| ||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44565105 tcataaggggaggggagggattttaaaatcaaattacctttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 44565196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 261798 - 261672
Alignment:
Q  132 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 231  Q
    |||||||||||||||||||| ||||||||||||| || ||||||| ||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||    
T  261798 gggagggaagagattttaattaaatatgtgtttggttcataaggggaggggagagattttaaaaccaaattacttttttat-cctctaaccttaaaacaa 261700  T
Q  232 tatcatgatttttatattattcacttca 259  Q
    ||||||||||||||||||||||||||||    
T  261699 tatcatgatttttatattattcacttca 261672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 2326959 - 2326768
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| | |||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |          |||||||| |||||||| |||| |    
T  2326959 ggagggaatggaaggggagatatatcaattatatatatgtttggttcaaatgatgggagggaaggggagtgaaggtattttaattaaatatgtatttggt 2326860  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||| ||| ||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  2326859 tcatacggggaggggagggattttaaaaccaaattacctttttacccctctaaccttaaaacaatattatgatttttatattattcacttca 2326768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 49622781 - 49622727
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49622781 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 49622727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 261612 - 261558
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  261612 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 261558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 2326709 - 2326655
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2326709 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 2326655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 15544675 - 15544729
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15544675 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 15544729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 44565256 - 44565310
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44565256 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 44565310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 51621732 - 51621678
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51621732 gttctaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 51621678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 21374065 - 21374002
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 141  Q
    |||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  21374065 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaag 21374002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 11376870 - 11376924
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  11376870 gttctaacaaaatattaggtattcataaatattaaagcacttctaaaataatcta 11376924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 29743658 - 29743711
Alignment:
Q  320 ttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  29743658 ttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 29743711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 46833445 - 46833499
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||||    
T  46833445 gttctaacaaaatattaggtattcataaatattagaacaattctaaaataatcta 46833499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 37661989 - 37661901
Alignment:
Q  172 aagggaaggagagggattttaaaaccaaattacttttttc-tccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||||| ||| ||||||||||||||| |||||||||||||  |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37661989 aaggggaggggagggattttaaaactaaattactttttttatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37661901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 33505744 - 33505859
Alignment:
Q  144 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttt 243  Q
    |||| ||| |||||| |||||| || |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | |||||  |||||    
T  33505744 atttcaattaaatatatgtttggttcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatagtatcacaatttt 33505843  T
Q  244 tatattattcacttca 259  Q
    || |||||||||||||    
T  33505844 taaattattcacttca 33505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 42886921 - 42886964
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataat 370  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  42886921 aaaatattaggtattcataaatattagagcacttctaaaataat 42886964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 15429337 - 15429390
Alignment:
Q  206 tttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||||| ||||||||| ||||||||||| |||||||||| | |||||||||||||    
T  15429337 tttttatccctctaatcttaaaacaatctcatgattttaaaattattcacttca 15429390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 11376582 - 11376616
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa 90  Q
    |||||||||||| ||||||||||||||||||||||    
T  11376582 aggggaggggaggggttttaatggaggggagggaa 11376616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 21374102 - 21374068
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa 90  Q
    |||||||||||| ||||||||||||||||||||||    
T  21374102 aggggaggggaggggttttaatggaggggagggaa 21374068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 49623114 - 49623081
Alignment:
Q  20 tgtgatcttgaaacaaatggactcatccaaccat 53  Q
    |||| |||||||||||||||||||||||||||||    
T  49623114 tgtgctcttgaaacaaatggactcatccaaccat 49623081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 25700350 - 25700306
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaaggggagatat 100  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||    
T  25700350 aggggaggggagggattttaacggaggggaggggaggggagatat 25700306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 18227319 - 18227503
Alignment:
Q  75 aatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataag 174  Q
    ||||||||| || ||| ||||| |||||||||||||||||| |||| |||||||||||||||||| | ||||||||| ||||||||||||| || |||||    
T  18227319 aatggagggaagagaatgggaggtatatcaattaaatatatgtttggttcaaatgatgggagggacgggattttaattaaatatgtgtttggttcataag 18227418  T
Q  175 ggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    || ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18227419 gggaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 18227503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 20219057 - 20219168
Alignment:
Q  146 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattttta 245  Q
    |||||| ||||||||||||| || | |||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20219057 tttaattaaatatgtgtttggttcacaaggggtgggaagggattttaaaaccaaattacttttttatccctctaatcttaaaacaatatcatgattttta 20219156  T
Q  246 tattattcactt 257  Q
     |||||||||||    
T  20219157 aattattcactt 20219168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 22113082 - 22113193
Alignment:
Q  146 tttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgattttta 245  Q
    |||||| ||||||||||||| || | |||||  ||  |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  22113082 tttaattaaatatgtgtttggttcacaaggggtgggaagggattttaaaaccaaattacttttttatccctctaatcttaaaacaatatcatgattttta 22113181  T
Q  246 tattattcactt 257  Q
     |||||||||||    
T  22113182 aattattcactt 22113193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 11455106 - 11455297
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag-------------attttaatcaaatatgtgttt 164  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||| ||||||||| |             | ||||||||||||| |||||    
T  11455106 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgataggagggaaggggacgggagggattaatttaatcaaatatatgttt 11455205  T
Q  165 gatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | || | ||||| ||| ||||||||||||||| ||||||||||||| | |||||||  |||||| | ||||  |||||||| |||||||||||||    
T  11455206 ggttcacaaggggaggggagggattttaaaactaaattacttttttat-cctctaatattaaaatagtatc--gatttttaaattattcacttca 11455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 20219243 - 20219289
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  20219243 aaaatattaggtattcataaatattagagcacttctaaaataatcta 20219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 22113268 - 22113314
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  22113268 aaaatattaggtattcataaatattagagcacttctaaaataatcta 22113314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 17508420 - 17508520
Alignment:
Q  95 agatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaa 194  Q
    |||||| | |||||||||||| |||| |||||| || ||||||| ||||||| |||| ||| |||||||||||| | |||| ||   |||||||||||||    
T  17508420 agatatttgaattaaatatatgtttggttcaaaagaggggaggggagagattctaattaaaaatgtgtttgattcacaaggaaaattgagggattttaaa 17508519  T
Q  195 a 195  Q
    |    
T  17508520 a 17508520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 18227562 - 18227605
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttct 362  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  18227562 gttctcacataatattaggtattcataaatattagagcacttct 18227605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 251 - 60
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |          |||||||| ||||||||||||| |    
T  251 ggagggaagggaaagggagatatatcaattaaatatatgtttggttcaaatgatgggagggaaggggagggaagggattttaattaaatatgtgtttggt 152  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  151 tcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 60  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 6610963 - 6610772
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |          |||||||| ||||||||||||| |    
T  6610963 ggagggaagggaaagggagatatatcaattaaatatatgtttggttcaaatgatgggagggaaggggagggaagggattttaattaaatatgtgtttggt 6610864  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6610863 tcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 6610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 43633687 - 43633808
Alignment:
Q  136 gggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatc 235  Q
    |||||| ||||||||| ||||  ||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43633687 gggaagggattttaattaaat--gtgtttggttcataagggaaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatatc 43633784  T
Q  236 atgatttttatattattcacttca 259  Q
    ||||||||||||||||||||||||    
T  43633785 atgatttttatattattcacttca 43633808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 2955918 - 2956107
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgat 167  Q
    |||||| ||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||          ||||||||||||||||| |||||| |    
T  2955918 ggagggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggagggaagggaaggggagagattttaatcaaatatatgtttggt 2956017  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcactt 257  Q
    | | ||||| |||  || ||||||||||| ||||||||||||| |||||||||  |||||| | ||||| |||||||| ||||| |||||    
T  2956018 tcacaaggggagggtagagattttaaaactaaattacttttttatccctctaatattaaaatagtatcacgatttttaaattatccactt 2956107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 132 - 257
Target Start/End: Original strand, 36557098 - 36557223
Alignment:
Q  132 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 231  Q
    ||||||| || |||||||||||||||| |||||| |||| ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| |     
T  36557098 gggaggggagggattttaatcaaatatatgtttggtttacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatag 36557197  T
Q  232 tatcatgatttttatattattcactt 257  Q
    ||||| |||||||| |||||||||||    
T  36557198 tatcacgatttttaaattattcactt 36557223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 78 - 256
Target Start/End: Original strand, 40977542 - 40977725
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgg-----gagggaagagattttaatcaaatatgtgtttgatttata 172  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| ||||||||||||     ||||| || |||||||||||||||| |||||| || |      
T  40977542 ggagggaagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggggaggggagggattttaatcaaatatatgtttggttcacg 40977641  T
Q  173 agggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcact 256  Q
    |||| ||| ||||||||||||||| |||||||| |||| ||||| |||  |||||| | |||||  ||||||| ||||||||||    
T  40977642 aggggaggggagggattttaaaactaaattactgttttgtccctataatattaaaatagtatcacaatttttaaattattcact 40977725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 22976388 - 22976472
Alignment:
Q  54 ctaggggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 138  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  22976388 ctaggggaggggaggggttttaatggaggggagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggg 22976472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 21595277 - 21595150
Alignment:
Q  132 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 231  Q
    ||||||| || |||||||||||||||| |||||| || | ||||| ||||||  ||||||||||| ||||||||||||| |||||||||  |||||| |     
T  21595277 gggaggggagggattttaatcaaatatatgtttggttcagaaggggaggagaaagattttaaaactaaattacttttttatccctctaatattaaaatag 21595178  T
Q  232 tatcatgatttttatattattcacttca 259  Q
    ||||| |||||||| |||||||||||||    
T  21595177 tatcacgatttttaaattattcacttca 21595150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 6610711 - 6610658
Alignment:
Q  320 ttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  6610711 ttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 6610658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 370
Target Start/End: Original strand, 43633868 - 43633919
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataat 370  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  43633868 gttctaacaaaatattaggtattcataaatattagagcacttttaaaataat 43633919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 43047901 - 43047961
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggaggg 138  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||| ||||||    
T  43047901 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgataggaggg 43047961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 43047984 - 43048083
Alignment:
Q  160 tgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    |||||| || | ||||| ||| |||| |||||||||| ||||||||||||| |||||||||  |||||| |  || | |||||||| |||||||||||||    
T  43047984 tgtttggttcacaaggggaggggaggaattttaaaactaaattacttttttatccctctaatattaaaatagcataacgatttttaaattattcacttca 43048083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 22976474 - 22976560
Alignment:
Q  173 agggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    |||||||| ||||||| ||||||| ||||||||||||| ||||| |||  |||||| | |||||  ||||| | |||||||||||||    
T  22976474 agggaaggggagggatattaaaactaaattacttttttatccctataatattaaaatagtatcacaattttaaaattattcacttca 22976560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 36557047 - 36557087
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaaggggag 96  Q
    |||||||||||| |||||||||||||||||||||| |||||    
T  36557047 aggggaggggaggggttttaatggaggggagggaaagggag 36557087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 27424357 - 27424325
Alignment:
Q  328 aaatattaggtattcataaatattagagcactt 360  Q
    |||||||||||||| ||||||||||||||||||    
T  27424357 aaatattaggtatttataaatattagagcactt 27424325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 29008804 - 29008622
Alignment:
Q  87 ggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgatttataaggg 176  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||          |||||||||| ||||||||||||| ||  || |||    
T  29008804 ggaaggggagatatatcaattaaatatatgtttgattcaaatgatgggagggaaggggagtgaagagattttaattaaatatgtgtttggttcgtacggg 29008705  T
Q  177 aaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
     ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29008704 gaggggagggattttaaaaccaaattacttttttatccctctaaccttaaaacaatattatgatttttatattattcacttca 29008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 12314068 - 12313887
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataaggga 177  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| || | | |||     
T  12314068 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaagagattttaattaaatatgtgtttggttcacaggggg 12313969  T
Q  178 aggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||| |||||||||||||||  |||||||||||| |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  12313968 aggggagggattttaaaactgaattacttttttatccctctaatattaaaatagtatcacgatttttaaattattcacttca 12313887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 1827889 - 1828080
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgat 167  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||| |||||||          ||||||||||||||||| |||||| |    
T  1827889 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatggaagggaaggggaggggagagattttaatcaaatatatgtttggt 1827988  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | | ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | ||||| |||||||| ||||| |||||||    
T  1827989 tcacaaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatagtatcacgatttttaaattatccacttca 1828080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 78 - 257
Target Start/End: Original strand, 47645423 - 47645612
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgat 167  Q
    |||||| ||||||||| |||||| |||||||||||||| |||| ||||||||||| ||||||||          ||||||||||||||||| |||||| |    
T  47645423 ggagggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgagagggaaggggaggggagagattttaatcaaatatatgtttggt 47645522  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcactt 257  Q
    | | ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | ||||| |||||||| |||||||||||    
T  47645523 tcacaaggggaggggagggattttaaaactaaattacttttttatccctttaatattaaaatagtatcacgatttttaaattattcactt 47645612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 33118636 - 33118828
Alignment:
Q  82 gggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatg----------ggagggaagagattttaatcaaatatgtgtttgatttat 171  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||||||          |||||||||||||||||||||||||| |||||| || |     
T  33118636 gggagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgagagggaaggggagggaagagattttaatcaaatatatgtttggttcac 33118735  T
Q  172 a-----agggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    |     |||| ||| ||||||||||||||| |||||||||| || |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  33118736 aagggtaggggaggggagggattttaaaactaaattactttattatccctctaatattaaaatagtatcacgatttttaaattattcacttca 33118828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 44119256 - 44119040
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaaga------------- 142  Q
    ||||||||||||  | |||||||||||| ||||||||  | |||| |||||||||||||| |||| ||||||||||||| |||| |                  
T  44119256 aggggaggggaggaggtttaatggagggaagggaaggaaaaatatttcaattaaatatatgtttggttcaaatgatgggtgggagggatgggaaggggat 44119157  T
Q  143 -gattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatt 241  Q
     |||||||||||||||| |||||| || | ||||| | | ||||||||||||||| ||||||||||||| ||| |||||  |||||| | ||||| ||||    
T  44119156 ggattttaatcaaatatatgtttggttcagaaggggatgggagggattttaaaactaaattacttttttatccatctaatattaaaatagtatcacgatt 44119057  T
Q  242 tttatattattcacttc 258  Q
    |||| ||||||||||||    
T  44119056 tttaaattattcacttc 44119040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 29008559 - 29008509
Alignment:
Q  323 taacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29008559 taacaaaatattaggtattcataaatattagagcacttctaaaataatcta 29008509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 40461338 - 40461283
Alignment:
Q  85 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa 140  Q
    |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||    
T  40461338 agggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaa 40461283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 42027849 - 42027803
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  42027849 aaaatattaggtattcataaatattagagcacttctaaaataatcta 42027803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 40040517 - 40040553
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttcta 363  Q
    |||||||||||||||||||||||||| |||| |||||    
T  40040517 aaaatattaggtattcataaatattaaagcagttcta 40040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 259
Target Start/End: Complemental strand, 38024708 - 38024524
Alignment:
Q  85 agggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgatttataag 174  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |          |||||||| ||||||||||||| || ||||     
T  38024708 agggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaaggggagggaatgaattttaattaaatatgtgtttggttcataaa 38024609  T
Q  175 ggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    || ||| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38024608 gggaggggagagattttaaaaccaaattacttttttatccttctaaccttaaaacaatatcatgatttttatattattcacttca 38024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 6885234 - 6885015
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaaggg-----gagatatatcaattaaatatatatttgcttcaaatgatgggagg----------gaa 140  Q
    |||||||| ||| ||||||||||||||||||||||| |     ||||||||||||||||||||||||||| ||||||||||||||||          |||    
T  6885234 aggggaggagaggggttttaatggaggggagggaagagaaggagagatatatcaattaaatatatatttggttcaaatgatgggaggtagggggagagaa 6885135  T
Q  141 gagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccct-ctaaccttaaaacaatatcatga 239  Q
    | ||||||||| ||||||||||||| || ||||||||||| |||| ||||||||| |||||||| ||||| ||| | |||||||||||||||||||||||    
T  6885134 gggattttaattaaatatgtgtttggttcataagggaaggggaggaattttaaaatcaaattacctttttatccgtgctaaccttaaaacaatatcatga 6885035  T
Q  240 tttttatattattcacttca 259  Q
    ||||||||||||||||||||    
T  6885034 tttttatattattcacttca 6885015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 87 - 259
Target Start/End: Original strand, 29118913 - 29119085
Alignment:
Q  87 ggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagaggg 186  Q
    |||||||||||||| ||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||| |||||| || | || |  ||| |||||    
T  29118913 ggaaggggagatatttcaattaaatatatgattggttcaaatgatgggaggggagagattttaatcaaatatatgtttggttcacaaagagaggggaggg 29119012  T
Q  187 attttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    |||||||||| ||||||||||||| ||||||||| ||||||| | ||| | |||||||| |||||||||||||    
T  29119013 attttaaaactaaattacttttttatccctctaatcttaaaatagtattacgatttttaaattattcacttca 29119085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 37563788 - 37563915
Alignment:
Q  132 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 231  Q
    |||||| ||||||||||||| |||||| |||||| || ||||||| ||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||    
T  37563788 gggaggaaagagattttaattaaatatatgtttggttcataaggggaggggagagattttaaaatcaaattacttttttatccctctaaccttaaaacaa 37563887  T
Q  232 tatcatgatttttatattattcacttca 259  Q
    ||||||||||||||||||||||||||||    
T  37563888 tatcatgatttttatattattcacttca 37563915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 49284259 - 49284074
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag-----attttaatcaaatatgtgtttgatttata 172  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| |||||||||||||||||||| |     ||||||||||||||| |||||| || | |    
T  49284259 ggagggaagggaatgggagatatttcaattaaatatatgtttggttcaaatgatgggagggaaggggagggattttaatcaaatatatgtttggttcaca 49284160  T
Q  173 agggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||| |||| ||| ||||||||||| ||||||||||||| |||||||||  |||||| | |||||||||||||| |||||||||||||    
T  49284159 agg-aaggggagagattttaaaactaaattacttttttatccctctaatattaaaatagtatcatgatttttaaattattcacttca 49284074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 55873512 - 55873687
Alignment:
Q  94 gagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgatttataagggaaggaga 183  Q
    ||||||||||||||||||||||||||| |||||| ||| | |||||||          |||||||||| ||||||||||||| || | ||||| |||  |    
T  55873512 gagatatatcaattaaatatatatttggttcaaacgatagaagggaaggggaggggggagattttaattaaatatgtgtttggttcacaaggggagggaa 55873611  T
Q  184 gggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||    
T  55873612 gagattttaaaaccaaattacttttttatccctctaatcttaaaataatatcatgatttttaaattattcacttca 55873687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 29191025 - 29191151
Alignment:
Q  132 gggagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaa 231  Q
    ||||| |||| ||||||||| || |||||||||| || ||| |||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29191025 gggagtgaagggattttaattaagtatgtgtttggttcatacgggaggg-gagggattttaaaaccaaattacctttttatccctctaaccttaaaacaa 29191123  T
Q  232 tatcatgatttttatattattcacttca 259  Q
    ||| ||||||||||||||||||||||||    
T  29191124 tattatgatttttatattattcacttca 29191151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 54975749 - 54975840
Alignment:
Q  59 ggaggggagtggttttaatggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagagattttaa 150  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  54975749 ggaggggaggggttttaatggagggaagggaaggggagatatatcaattaaatatatatttggttcaaatgatgggagggaagggattttaa 54975840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 54975830 - 54975906
Alignment:
Q  183 agggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54975830 agggattttaaaatcaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 54975906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 257
Target Start/End: Complemental strand, 42739771 - 42739582
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| ||||||||| |||||| |||||||||||||| |||| |||||||||||||| ||||| |          ||||||||||||||| |||||| |    
T  42739771 ggagggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggacggaaggggaggggagggattttaatcaaatatatgtttggt 42739672  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcactt 257  Q
    | | ||||| ||| |||| |||||||||| ||||||||||||| |||||||||  |||||| | ||||| |||||||| |||||||||||    
T  42739671 tcacaaggggaggggaggaattttaaaactaaattacttttttatccctctaatattaaaatagtatcacgatttttaaattattcactt 42739582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 1921145 - 1921336
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgg----------gagggaagagattttaatcaaatatgtgtttgat 167  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| ||||||||||||          ||||| || |||||||||||||||| |||||| |    
T  1921145 ggagggaagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggggaggggaggggagggattttaatcaaatatatgtttggt 1921244  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | |||||  ||||||| |||||||||||||    
T  1921245 tcacgagggtaggggagggattttaaaacaaaattacttttttatccctataatattaaaatagtatcacaatttttaaattattcacttca 1921336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 22443922 - 22443731
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgg----------gagggaagagattttaatcaaatatgtgtttgat 167  Q
    |||||| |||||| ||||||||| |||||||||||||| |||| ||||||||||||          ||||| || |||||||||||||||| |||||| |    
T  22443922 ggagggaagggaaagggagatatttcaattaaatatatgtttggttcaaatgatggaaggggaggggaggggagggattttaatcaaatatatgtttggt 22443823  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | |  |||| ||| ||||||||||||||| ||||||||||||| ||||| |||  |||||| | ||| |  ||||||| |||||||||||||    
T  22443822 tcacgaggggaggggagggattttaaaactaaattacttttttatccctataatattaaaatagtattacaatttttaaattattcacttca 22443731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 47497566 - 47497690
Alignment:
Q  134 gagggaagagattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaa-ccttaaaacaat 232  Q
    ||||| |||||||||||| |||| | |||||| || | ||||| ||| || ||||||||| |||||||||||||||| ||||||||| ||||||||| ||    
T  47497566 gaggggagagattttaattaaatgtatgtttggttcacaaggggaggtgaaggattttaacaccaaattacttttttatccctctaatccttaaaactat 47497665  T
Q  233 atcatgatttttatattattcactt 257  Q
     | |||||||| | |||||||||||    
T  47497666 cttatgattttaaaattattcactt 47497690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 29191204 - 29191258
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  29191204 gttctaacaaaatattaggtattcataaatattaaagcacttctaaaataatcta 29191258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 54975965 - 54976019
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  54975965 gttctaacaaaatattagatattcataaatattagagcacttctaaaataatcta 54976019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 41279202 - 41279317
Alignment:
Q  144 attttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttc-tccctctaaccttaaaacaatatcatgattt 242  Q
    |||||||| |||||||| |||| || | ||||| |||  || ||||||| | ||||||| |||||||  ||||||||| |||||||||||||||||||||    
T  41279202 attttaattaaatatgtatttggttcacaaggggagggaagagattttata-ccaaattgctttttttatccctctaatcttaaaacaatatcatgattt 41279300  T
Q  243 ttatattattcacttca 259  Q
    ||| |||||||||||||    
T  41279301 ttaaattattcacttca 41279317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 38024465 - 38024414
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataat 370  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  38024465 gttctaataaaatattaggtattcataaatattagagcacttctaaaataat 38024414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 8067199 - 8067268
Alignment:
Q  177 aaggagagggattttaaaaccaaattacttttttc-tccctctaaccttaaaacaatatcatgattttta 245  Q
    |||||||||||||||||| |||| ||||||||||  ||||| ||| ||||||||||||||||||||||||    
T  8067199 aaggagagggattttaaatccaagttactttttttatccctttaatcttaaaacaatatcatgattttta 8067268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 39593379 - 39593207
Alignment:
Q  90 aggggagatatatcaattaaatatatatttgcttcaaatgatgg-----gagggaagagattttaatcaaatatgtgtttgatttataagggaaggagag 184  Q
    ||||||||||||| |||||||||| | |||| |||||| || ||     ||||| |||||||||||| |||| | |||||| || | ||||| ||| |||    
T  39593379 aggggagatatattaattaaatatgtgtttggttcaaaagagggaaggggaggggagagattttaattaaatgtatgtttggttcagaaggggaggtgag 39593280  T
Q  185 ggattttaaaaccaaattacttttttctccctctaa-ccttaaaacaatatcatgatttttatattattcactt 257  Q
    || |||||| |||||||||| ||||| ||| ||||| ||||||||| || |||||||||| | ||||| |||||    
T  39593279 gg-ttttaacaccaaattacctttttatccttctaatccttaaaactatctcatgattttaaaattatccactt 39593207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 6884958 - 6884912
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6884958 aaaatattaagtattcataaatattagagcacttctaaaataatcta 6884912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 37563973 - 37564027
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||    
T  37563973 gttctaataaaatattaggtattcataaatattagagcgtttctaaaataatcta 37564027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 30548051 - 30548114
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 141  Q
    ||||||||||||||||||||||| | |||||||||| | |||| |||||| || ||||||||||    
T  30548051 ggaggggagggaaggggagatattttaattaaatatgtgtttggttcaaaagaggggagggaag 30548114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 55873758 - 55873804
Alignment:
Q  327 aaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||||    
T  55873758 aaaatattaggtattcataaatattatagcacttctaagataatcta 55873804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 22443959 - 22443925
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa 90  Q
    |||||||||||| ||||||||||||||||||||||    
T  22443959 aggggaggggaggggttttaatggaggggagggaa 22443925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 38024752 - 38024718
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa 90  Q
    |||||||||||| ||||||||||||||||||||||    
T  38024752 aggggaggggaggggttttaatggaggggagggaa 38024718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 42739808 - 42739774
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa 90  Q
    |||||||||||| ||||||||||||||||||||||    
T  42739808 aggggaggggaggggttttaatggaggggagggaa 42739774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 30411577 - 30411399
Alignment:
Q  86 gggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag-----------agattttaatcaaatatgtgtttgatttataag 174  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||           |||||||||| |||||| ||||||||| |||||    
T  30411577 gggaaggggagatatatcaattaaatatatgtttggttcaaatgatgggagggaagggggaaggaagagattttaattaaatatatgtttgattcataag 30411478  T
Q  175 ggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattc 253  Q
    |||| | || |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  30411477 ggaatgggatggattttaaaaccaaattacttttttatccctctagccttaaaacaatatcatgatttttatattattc 30411399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 35384171 - 35384347
Alignment:
Q  93 ggagatatatcaattaaatatatatttgcttcaaatgatggga----------gggaagagattttaatcaaatatgtgtttgatttataagggaaggag 182  Q
    ||||||||||||||||||||||| |||| ||||||||||||||          |||||||||||||||| ||||||||||||| || |||| || ||| |    
T  35384171 ggagatatatcaattaaatatatgtttggttcaaatgatgggacggaagggaagggaagagattttaattaaatatgtgtttggttcataatgggagggg 35384270  T
Q  183 agggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35384271 agagattttaaaatcaaattacttttttatccctctaaccttaaaacaatatcatgatttttatattattcacttca 35384347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 1751295 - 1751486
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgat 167  Q
    |||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||          ||||||||||||||||| |||||| |    
T  1751295 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaaggggaggggagagattttaatcaaatatatgtttggt 1751394  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| | ||||| |||||||| ||||| |||||||    
T  1751395 tcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatagtatcacgatttttaaattatccacttca 1751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 251
Target Start/End: Complemental strand, 11726762 - 11726579
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa----------gagattttaatcaaatatgtgtttgat 167  Q
    |||||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||          |||||||||||||||||| |||||| |    
T  11726762 ggagggaagggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaaagggaggggagagattttaatcaaatatatgtttggt 11726663  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattat 251  Q
    | | ||||| ||| ||||||||||||||| ||||||||||||| |||||||||  |||||| | ||||| |||||||| |||||    
T  11726662 tcacaaggggaggggagggattttaaaactaaattacttttttatccctctaatattaaaatagtatcacgatttttaaattat 11726579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 10329894 - 10329701
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaa----------gagattttaatcaaatatgtgtttgat 167  Q
    |||||| | |||||||||||||| |||||||||||||| |||| |||||||||||||||||||          |||||||||||||||||| |||||| |    
T  10329894 ggagggaaaggaaggggagatatttcaattaaatatatgtttggttcaaatgatgggagggaatgagaggggagagattttaatcaaatatatgtttggt 10329795  T
Q  168 ttataagggaaggagagggattttaaaaccaaattactt--ttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | | ||||| | | ||||||||||||||| |||||||||  |||| |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  10329794 tcacaaggggatgggagggattttaaaactaaattacttttttttatccctctaatattaaaatagtatcacgatttttaaattattcacttca 10329701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 259
Target Start/End: Original strand, 37275944 - 37276135
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| | |||||||||||||| |||||||||||||| |||| |||||||| ||||||||||| |          |||| ||||||||||  ||||| |    
T  37275944 ggagggaaaggaaggggagatatttcaattaaatatatgtttggttcaaatggtgggagggaaggggaggggagggatttcaatcaaatataggtttggt 37276043  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | | ||||| ||| ||| ||||||||||| | ||||||||| | |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37276044 tcacaaggggaggggagagattttaaaactacattacttttctatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37276135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 35384406 - 35384460
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35384406 gttcgaacaaaatattaggtattcataaatattagagcacttctaaaataatcta 35384460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 30411333 - 30411279
Alignment:
Q  319 gttctaacaaaatattaggtattcataaatattagagcacttctagaataatcta 373  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  30411333 gttctaacaaaatattagatatccataaatattagagcacttctaaaataatcta 30411279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 37275336 - 37275249
Alignment:
Q  172 aagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    ||||| ||| ||| ||||||||||| ||||||||||| | |||||||||  |||||| | ||||| |||||||| |||||||||||||    
T  37275336 aaggggaggggagagattttaaaactaaattacttttctatccctctaatattaaaatagtatcacgatttttaaattattcacttca 37275249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 37275397 - 37275334
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag 141  Q
    |||||| | |||| ||||||||| |||||||||||||| |||| |||||||| |||||||||||    
T  37275397 ggagggaaaggaatgggagatatttcaattaaatatatgtttggttcaaatggtgggagggaag 37275334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 25595669 - 25595631
Alignment:
Q  58 gggaggggagtggttttaatggaggggagggaaggggag 96  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  25595669 gggaggggaggggttttaatggaggggagggaaagggag 25595631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 257
Target Start/End: Original strand, 27987 - 28174
Alignment:
Q  80 aggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaag----------agattttaatcaaatatgtgtttgattt 169  Q
    |||| ||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||          ||||||||||||||||| |||||| ||     
T  27987 agggaagggaagggaagatatttcaattaaatatatgtttggttcaaatgatgggagggaaggggacgggagagattttaatcaaatatatgtttggttc 28086  T
Q  170 ataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcactt 257  Q
    | ||||| ||| ||||||||||||||| ||||||||||||| ||| |||||  |||||| | ||||||||||||||  ||||||||||    
T  28087 acaaggggaggggagggattttaaaactaaattacttttttatccatctaatattaaaatagtatcatgatttttaacttattcactt 28174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 46485675 - 46485484
Alignment:
Q  78 ggaggggagggaaggggagatatatcaattaaatatatatttgcttcaaatgatgggagggaagag----------attttaatcaaatatgtgtttgat 167  Q
    |||||| |||||||||||||||| | |||||||||||| |||| |||||||||||||||||||| |          ||||||||||||||  |||||| |    
T  46485675 ggagggaagggaaggggagatattttaattaaatatatgtttggttcaaatgatgggagggaaggggaagggagggattttaatcaaatacatgtttggt 46485576  T
Q  168 ttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatttttatattattcacttca 259  Q
    | | ||||| |||  |||||||||||||| ||||||||||||| |||||||||  |||||||| || ||  ||||||| |||||||||||||    
T  46485575 tcacaaggggagggcagggattttaaaactaaattacttttttatccctctaatattaaaacagtaacacaatttttaaattattcacttca 46485484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 7311392 - 7311490
Alignment:
Q  142 agattttaatcaaatatgtgtttgatttataagggaaggagagggattttaaaaccaaattacttttttctccctctaaccttaaaacaatatcatgatt 241  Q
    |||||||||| |||||| |||||| | || ||||| ||  ||| |||||||||| |||||||   |||| ||||||||| ||||||||||| ||||||||    
T  7311392 agattttaattaaatatatgtttggtgtagaaggggagacgagagattttaaaatcaaatta---ttttatccctctaatcttaaaacaatctcatgatt 7311488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 46485712 - 46485678
Alignment:
Q  56 aggggaggggagtggttttaatggaggggagggaa 90  Q
    |||||||||||| ||||||||||||||||||||||    
T  46485712 aggggaggggaggggttttaatggaggggagggaa 46485678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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