View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4314-Insertion-12 (Length: 149)

Name: NF4314-Insertion-12
Description: NF4314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4314-Insertion-12
NF4314-Insertion-12
[»] chr7 (11 HSPs)
chr7 (2-146)||(10498264-10498408)
chr7 (2-146)||(10503293-10503437)
chr7 (17-146)||(13336883-13337012)
chr7 (2-132)||(13344780-13344909)
chr7 (2-30)||(3045792-3045820)
chr7 (2-30)||(26286976-26287004)
chr7 (2-30)||(27238479-27238507)
chr7 (2-30)||(27256473-27256501)
chr7 (2-30)||(30258337-30258365)
chr7 (2-30)||(40865189-40865217)
chr7 (2-30)||(44510507-44510535)
[»] chr3 (20 HSPs)
chr3 (2-146)||(35457525-35457663)
chr3 (44-120)||(35467772-35467848)
chr3 (2-33)||(13156231-13156262)
chr3 (6-37)||(13166975-13167006)
chr3 (2-36)||(31002921-31002955)
chr3 (2-39)||(3033865-3033902)
chr3 (2-39)||(3672807-3672844)
chr3 (2-39)||(3692839-3692876)
chr3 (2-30)||(8069909-8069937)
chr3 (2-30)||(8883400-8883428)
chr3 (2-30)||(8888160-8888188)
chr3 (2-30)||(10586019-10586047)
chr3 (2-30)||(10708507-10708535)
chr3 (2-30)||(27709167-27709195)
chr3 (2-30)||(45904374-45904402)
chr3 (2-30)||(45904830-45904858)
chr3 (2-30)||(46964250-46964278)
chr3 (2-30)||(55326011-55326039)
chr3 (2-29)||(28125373-28125400)
chr3 (2-29)||(47566978-47567005)
[»] chr2 (5 HSPs)
chr2 (2-36)||(30629081-30629115)
chr2 (2-30)||(25497156-25497184)
chr2 (2-30)||(29678004-29678032)
chr2 (2-30)||(30651165-30651193)
chr2 (2-29)||(28855236-28855263)
[»] scaffold0002 (3 HSPs)
scaffold0002 (6-37)||(139982-140013)
scaffold0002 (2-33)||(150726-150757)
scaffold0002 (2-30)||(4310-4338)
[»] chr1 (7 HSPs)
chr1 (2-33)||(25779085-25779116)
chr1 (2-36)||(40166211-40166245)
chr1 (2-39)||(3094311-3094348)
chr1 (1-30)||(33301009-33301038)
chr1 (2-30)||(28434404-28434432)
chr1 (2-29)||(16833722-16833749)
chr1 (1-36)||(23280721-23280755)
[»] chr8 (18 HSPs)
chr8 (2-36)||(29220577-29220611)
chr8 (2-39)||(4238176-4238213)
chr8 (2-39)||(4242915-4242952)
chr8 (10-39)||(12820550-12820579)
chr8 (2-39)||(14035660-14035697)
chr8 (1-30)||(28564649-28564678)
chr8 (1-30)||(28572272-28572301)
chr8 (2-30)||(8331193-8331221)
chr8 (2-30)||(17026172-17026200)
chr8 (2-30)||(17556664-17556692)
chr8 (2-30)||(25367816-25367844)
chr8 (2-30)||(28559495-28559523)
chr8 (2-30)||(31449701-31449729)
chr8 (2-34)||(34818535-34818567)
chr8 (2-30)||(40125716-40125744)
chr8 (1-28)||(5884272-5884299)
chr8 (5-36)||(10933668-10933699)
chr8 (2-29)||(43302523-43302550)
[»] chr6 (7 HSPs)
chr6 (2-36)||(2863296-2863330)
chr6 (2-36)||(2882600-2882634)
chr6 (2-30)||(5856244-5856272)
chr6 (2-30)||(11428246-11428274)
chr6 (2-30)||(22609806-22609834)
chr6 (2-30)||(25314287-25314315)
chr6 (2-30)||(26201781-26201809)
[»] chr5 (15 HSPs)
chr5 (2-39)||(36937346-36937383)
chr5 (2-39)||(36942100-36942137)
chr5 (2-30)||(556927-556955)
chr5 (2-30)||(561699-561727)
chr5 (2-30)||(1429831-1429859)
chr5 (2-30)||(3666142-3666170)
chr5 (2-30)||(4872159-4872187)
chr5 (2-30)||(13301318-13301346)
chr5 (2-30)||(32461384-32461412)
chr5 (2-30)||(35679706-35679734)
chr5 (2-30)||(39518646-39518674)
chr5 (2-30)||(39523285-39523313)
chr5 (2-30)||(41996892-41996920)
chr5 (2-30)||(42001661-42001689)
chr5 (1-36)||(14013297-14013332)
[»] chr4 (12 HSPs)
chr4 (2-39)||(12874826-12874863)
chr4 (1-30)||(55251956-55251985)
chr4 (2-30)||(3997893-3997921)
chr4 (2-30)||(7902942-7902970)
chr4 (2-30)||(8030306-8030334)
chr4 (2-30)||(12823731-12823759)
chr4 (2-30)||(15134389-15134417)
chr4 (2-30)||(16421266-16421294)
chr4 (2-30)||(32081962-32081990)
chr4 (2-30)||(33463186-33463214)
chr4 (2-30)||(34560657-34560685)
chr4 (2-30)||(47574889-47574917)
[»] scaffold0240 (1 HSPs)
scaffold0240 (2-30)||(4210-4238)
[»] scaffold0182 (1 HSPs)
scaffold0182 (2-30)||(9717-9745)
[»] scaffold0061 (1 HSPs)
scaffold0061 (2-30)||(46015-46043)
[»] scaffold0060 (1 HSPs)
scaffold0060 (2-30)||(47693-47721)
[»] scaffold0054 (2 HSPs)
scaffold0054 (2-30)||(25680-25708)
scaffold0054 (2-30)||(29396-29424)
[»] scaffold0017 (1 HSPs)
scaffold0017 (2-30)||(152744-152772)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 10498408 - 10498264
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatcaatccagaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatcta 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10498408 aatggtggtaacaccatatttgagtggtcacaatatcattccagaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatcta 10498309  T
Q  102 gcaaagagttcaacccacctaggacaatagaccgatacaatatat 146  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    
T  10498308 gcaaagagttcaacccacctaggacaatagacggataaaatatat 10498264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 10503437 - 10503293
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatcaatccagaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatcta 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10503437 aatggtggtaacaccatatttgagtggtcacaatatcattccagaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatcta 10503338  T
Q  102 gcaaagagttcaacccacctaggacaatagaccgatacaatatat 146  Q
    |||||||||||||||||||||||||||||||| |||| |||||||    
T  10503337 gcaaagagttcaacccacctaggacaatagacggataaaatatat 10503293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 13337012 - 13336883
Alignment:
Q  17 atatttgagtggtcacaatatcaatccagaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatctagcaaagagttcaacc 116  Q
    ||||||||||||||||||||||| || | ||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  13337012 atatttgagtggtcacaatatcattctacaatgagggtaggtgtatttgaaagaatgggaagagatggagaaatttcaacatctagcaaggagttcaacc 13336913  T
Q  117 cacctaggacaatagaccgatacaatatat 146  Q
     |||||||| |||||||||||| |||||||    
T  13336912 tacctaggagaatagaccgataaaatatat 13336883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 13344909 - 13344780
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatcaatccagaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatcta 101  Q
    |||||||||||||| ||||||||||| ||||||||||| | |||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||| ||    
T  13344909 aatggtggtaacactatatttgagtgatcacaatatcattacagaatgagg-taggtgtttttgaatcaaagggaagagatggagaactttcaacatata 13344811  T
Q  102 gcaaagagttcaacccacctaggacaataga 132  Q
    ||||| ||||||||||||| |||||||||||    
T  13344810 gcaaatagttcaacccaccaaggacaataga 13344780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 3045820 - 3045792
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  3045820 aatggtggtaacaccatatttgagtggtc 3045792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 26286976 - 26287004
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  26286976 aatggtggtaacaccatatttgagtggtc 26287004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 27238507 - 27238479
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  27238507 aatggtggtaacaccatatttgagtggtc 27238479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 27256501 - 27256473
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  27256501 aatggtggtaacaccatatttgagtggtc 27256473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 30258365 - 30258337
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  30258365 aatggtggtaacaccatatttgagtggtc 30258337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 40865189 - 40865217
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  40865189 aatggtggtaacaccatatttgagtggtc 40865217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 44510507 - 44510535
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  44510507 aatggtggtaacaccatatttgagtggtc 44510535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 35457663 - 35457525
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatcaatcc-agaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatct 100  Q
    |||||||||||||||||||||||||||||||| || || | | ||||| ||||||||||||||||||||||| |||  | || |||||||||||||||||    
T  35457663 aatggtggtaacaccatatttgagtggtcacagtaacatttctagaataagggtaggtgtttttgaaacaataggaatatattgagaactttcaacatct 35457564  T
Q  101 agcaaagagttcaacccacctaggacaatagaccgatacaatatat 146  Q
           ||||||||||||| ||||| |||||| |||| |||||||    
T  35457563 -------agttcaacccaccaaggactatagacggataaaatatat 35457525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 35467848 - 35467772
Alignment:
Q  44 agaatgagggtaggtgtttttgaaacaatgggacgagatggagaactttcaacatctagcaaagagttcaacccacc 120  Q
    |||||||||||||||| ||| |||||||| ||| |||||||||||||||||||| | | ||||||||||||||||||    
T  35467848 agaatgagggtaggtgctttggaaacaataggaagagatggagaactttcaacacccaacaaagagttcaacccacc 35467772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 13156231 - 13156262
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcaca 33  Q
    ||||||||||||||||||||||||||||||||    
T  13156231 aatggtggtaacaccatatttgagtggtcaca 13156262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 13166975 - 13167006
Alignment:
Q  6 gtggtaacaccatatttgagtggtcacaatat 37  Q
    ||||||||||||||||||||||||||||||||    
T  13166975 gtggtaacaccatatttgagtggtcacaatat 13167006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 31002955 - 31002921
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||||||||||||||||||| |||||    
T  31002955 aatggtggtaacaccatatttgagtggtctcaata 31002921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 3033902 - 3033865
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  3033902 aatggtggtaacaccatatttgagtggtctcaacatca 3033865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 3672844 - 3672807
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  3672844 aatggtggtaacaccatatttgagtggtctcaacatca 3672807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 3692876 - 3692839
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  3692876 aatggtggtaacaccatatttgagtggtctcaacatca 3692839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 8069937 - 8069909
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  8069937 aatggtggtaacaccatatttgagtggtc 8069909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 8883428 - 8883400
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  8883428 aatggtggtaacaccatatttgagtggtc 8883400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 8888188 - 8888160
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  8888188 aatggtggtaacaccatatttgagtggtc 8888160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 10586019 - 10586047
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  10586019 aatggtggtaacaccatatttgagtggtc 10586047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 10708507 - 10708535
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  10708507 aatggtggtaacaccatatttgagtggtc 10708535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 27709195 - 27709167
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  27709195 aatggtggtaacaccatatttgagtggtc 27709167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 45904374 - 45904402
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  45904374 aatggtggtaacaccatatttgagtggtc 45904402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 45904830 - 45904858
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  45904830 aatggtggtaacaccatatttgagtggtc 45904858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 46964278 - 46964250
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  46964278 aatggtggtaacaccatatttgagtggtc 46964250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 55326039 - 55326011
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  55326039 aatggtggtaacaccatatttgagtggtc 55326011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 29
Target Start/End: Complemental strand, 28125400 - 28125373
Alignment:
Q  2 aatggtggtaacaccatatttgagtggt 29  Q
    ||||||||||||||||||||||||||||    
T  28125400 aatggtggtaacaccatatttgagtggt 28125373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 29
Target Start/End: Original strand, 47566978 - 47567005
Alignment:
Q  2 aatggtggtaacaccatatttgagtggt 29  Q
    ||||||||||||||||||||||||||||    
T  47566978 aatggtggtaacaccatatttgagtggt 47567005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 30629115 - 30629081
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaata 36  Q
    |||||||||||||||||||||||||||||||||||    
T  30629115 aatggtggtaacaccatatttgagtggtcacaata 30629081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 25497156 - 25497184
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  25497156 aatggtggtaacaccatatttgagtggtc 25497184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 29678032 - 29678004
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  29678032 aatggtggtaacaccatatttgagtggtc 29678004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 30651193 - 30651165
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  30651193 aatggtggtaacaccatatttgagtggtc 30651165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 29
Target Start/End: Complemental strand, 28855263 - 28855236
Alignment:
Q  2 aatggtggtaacaccatatttgagtggt 29  Q
    ||||||||||||||||||||||||||||    
T  28855263 aatggtggtaacaccatatttgagtggt 28855236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 37
Target Start/End: Complemental strand, 140013 - 139982
Alignment:
Q  6 gtggtaacaccatatttgagtggtcacaatat 37  Q
    ||||||||||||||||||||||||||||||||    
T  140013 gtggtaacaccatatttgagtggtcacaatat 139982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 150757 - 150726
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcaca 33  Q
    ||||||||||||||||||||||||||||||||    
T  150757 aatggtggtaacaccatatttgagtggtcaca 150726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4338 - 4310
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  4338 aatggtggtaacaccatatttgagtggtc 4310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 25779085 - 25779116
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcaca 33  Q
    ||||||||||||||||||||||||||||||||    
T  25779085 aatggtggtaacaccatatttgagtggtcaca 25779116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 40166245 - 40166211
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||||||||||||||||||| |||||    
T  40166245 aatggtggtaacaccatatttgagtggtctcaata 40166211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 3094348 - 3094311
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  3094348 aatggtggtaacaccatatttgagtggtctcaacatca 3094311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33301009 - 33301038
Alignment:
Q  1 aaatggtggtaacaccatatttgagtggtc 30  Q
    ||||||||||||||||||||||||||||||    
T  33301009 aaatggtggtaacaccatatttgagtggtc 33301038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 28434404 - 28434432
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  28434404 aatggtggtaacaccatatttgagtggtc 28434432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 29
Target Start/End: Complemental strand, 16833749 - 16833722
Alignment:
Q  2 aatggtggtaacaccatatttgagtggt 29  Q
    ||||||||||||||||||||||||||||    
T  16833749 aatggtggtaacaccatatttgagtggt 16833722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23280721 - 23280755
Alignment:
Q  1 aaatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23280721 aaatggtggtaacac-atatttgagtggtcacaata 23280755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 29220611 - 29220577
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||| |||||||||||||||||||||    
T  29220611 aatggtggtaacatcatatttgagtggtcacaata 29220577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 4238176 - 4238213
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  4238176 aatggtggtaacaccatatttgagtggtctcaacatca 4238213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 4242915 - 4242952
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  4242915 aatggtggtaacaccatatttgagtggtctcaacatca 4242952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 12820579 - 12820550
Alignment:
Q  10 taacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||||    
T  12820579 taacaccatatttgagtggtcacaatatca 12820550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 14035697 - 14035660
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  14035697 aatggtggtgacatcatatttgagtggtcacaatatca 14035660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 28564649 - 28564678
Alignment:
Q  1 aaatggtggtaacaccatatttgagtggtc 30  Q
    ||||||||||||||||||||||||||||||    
T  28564649 aaatggtggtaacaccatatttgagtggtc 28564678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 28572272 - 28572301
Alignment:
Q  1 aaatggtggtaacaccatatttgagtggtc 30  Q
    ||||||||||||||||||||||||||||||    
T  28572272 aaatggtggtaacaccatatttgagtggtc 28572301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 8331193 - 8331221
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  8331193 aatggtggtaacaccatatttgagtggtc 8331221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 17026200 - 17026172
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  17026200 aatggtggtaacaccatatttgagtggtc 17026172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 17556692 - 17556664
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  17556692 aatggtggtaacaccatatttgagtggtc 17556664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 25367816 - 25367844
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  25367816 aatggtggtaacaccatatttgagtggtc 25367844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 28559495 - 28559523
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  28559495 aatggtggtaacaccatatttgagtggtc 28559523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 31449701 - 31449729
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  31449701 aatggtggtaacaccatatttgagtggtc 31449729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 34818535 - 34818567
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaa 34  Q
    |||||||||| ||||||||||||||||||||||    
T  34818535 aatggtggtagcaccatatttgagtggtcacaa 34818567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 40125716 - 40125744
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  40125716 aatggtggtaacaccatatttgagtggtc 40125744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 28
Target Start/End: Complemental strand, 5884299 - 5884272
Alignment:
Q  1 aaatggtggtaacaccatatttgagtgg 28  Q
    ||||||||||||||||||||||||||||    
T  5884299 aaatggtggtaacaccatatttgagtgg 5884272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 10933699 - 10933668
Alignment:
Q  5 ggtggtaacaccatatttgagtggtcacaata 36  Q
    |||||||||||||||||| |||||||||||||    
T  10933699 ggtggtaacaccatattttagtggtcacaata 10933668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 29
Target Start/End: Original strand, 43302523 - 43302550
Alignment:
Q  2 aatggtggtaacaccatatttgagtggt 29  Q
    ||||||||||||||||||||||||||||    
T  43302523 aatggtggtaacaccatatttgagtggt 43302550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 2863296 - 2863330
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||| |||||||||||||||||||||    
T  2863296 aatggtggtaacatcatatttgagtggtcacaata 2863330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 2882600 - 2882634
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||| |||||||||||||||||||||    
T  2882600 aatggtggtaacatcatatttgagtggtcacaata 2882634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 5856272 - 5856244
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  5856272 aatggtggtaacaccatatttgagtggtc 5856244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 11428274 - 11428246
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  11428274 aatggtggtaacaccatatttgagtggtc 11428246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 22609834 - 22609806
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  22609834 aatggtggtaacaccatatttgagtggtc 22609806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 25314287 - 25314315
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  25314287 aatggtggtaacaccatatttgagtggtc 25314315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 26201781 - 26201809
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  26201781 aatggtggtaacaccatatttgagtggtc 26201809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 36937346 - 36937383
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  36937346 aatggtggtaacaccatatttgagtggtctcaacatca 36937383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 36942100 - 36942137
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  36942100 aatggtggtaacaccatatttgagtggtctcaacatca 36942137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 556955 - 556927
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  556955 aatggtggtaacaccatatttgagtggtc 556927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 561727 - 561699
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  561727 aatggtggtaacaccatatttgagtggtc 561699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 1429831 - 1429859
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  1429831 aatggtggtaacaccatatttgagtggtc 1429859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 3666170 - 3666142
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  3666170 aatggtggtaacaccatatttgagtggtc 3666142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4872187 - 4872159
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  4872187 aatggtggtaacaccatatttgagtggtc 4872159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 13301318 - 13301346
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  13301318 aatggtggtaacaccatatttgagtggtc 13301346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 32461384 - 32461412
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  32461384 aatggtggtaacaccatatttgagtggtc 32461412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 35679706 - 35679734
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  35679706 aatggtggtaacaccatatttgagtggtc 35679734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 39518674 - 39518646
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  39518674 aatggtggtaacaccatatttgagtggtc 39518646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 39523313 - 39523285
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  39523313 aatggtggtaacaccatatttgagtggtc 39523285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 41996920 - 41996892
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  41996920 aatggtggtaacaccatatttgagtggtc 41996892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 42001689 - 42001661
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  42001689 aatggtggtaacaccatatttgagtggtc 42001661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14013332 - 14013297
Alignment:
Q  1 aaatggtggtaacaccatatttgagtggtcacaata 36  Q
    ||||||||||||||||||||||||||| ||| ||||    
T  14013332 aaatggtggtaacaccatatttgagtgatcaaaata 14013297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 12874863 - 12874826
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtcacaatatca 39  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  12874863 aatggtggtagcaccatatttgagtggtcataatatca 12874826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 55251985 - 55251956
Alignment:
Q  1 aaatggtggtaacaccatatttgagtggtc 30  Q
    ||||||||||||||||||||||||||||||    
T  55251985 aaatggtggtaacaccatatttgagtggtc 55251956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 3997893 - 3997921
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  3997893 aatggtggtaacaccatatttgagtggtc 3997921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 7902942 - 7902970
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  7902942 aatggtggtaacaccatatttgagtggtc 7902970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 8030306 - 8030334
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  8030306 aatggtggtaacaccatatttgagtggtc 8030334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 12823731 - 12823759
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  12823731 aatggtggtaacaccatatttgagtggtc 12823759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 15134417 - 15134389
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  15134417 aatggtggtaacaccatatttgagtggtc 15134389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 16421294 - 16421266
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  16421294 aatggtggtaacaccatatttgagtggtc 16421266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 32081962 - 32081990
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  32081962 aatggtggtaacaccatatttgagtggtc 32081990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 33463186 - 33463214
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  33463186 aatggtggtaacaccatatttgagtggtc 33463214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 34560685 - 34560657
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  34560685 aatggtggtaacaccatatttgagtggtc 34560657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 47574917 - 47574889
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  47574917 aatggtggtaacaccatatttgagtggtc 47574889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4238 - 4210
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  4238 aatggtggtaacaccatatttgagtggtc 4210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 9717 - 9745
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  9717 aatggtggtaacaccatatttgagtggtc 9745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 46043 - 46015
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  46043 aatggtggtaacaccatatttgagtggtc 46015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 47693 - 47721
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  47693 aatggtggtaacaccatatttgagtggtc 47721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 25708 - 25680
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  25708 aatggtggtaacaccatatttgagtggtc 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 29424 - 29396
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  29424 aatggtggtaacaccatatttgagtggtc 29396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 152744 - 152772
Alignment:
Q  2 aatggtggtaacaccatatttgagtggtc 30  Q
    |||||||||||||||||||||||||||||    
T  152744 aatggtggtaacaccatatttgagtggtc 152772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University