View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4314-Insertion-4 (Length: 112)
Name: NF4314-Insertion-4
Description: NF4314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4314-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 6e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 4183709 - 4183811
Alignment:
| Q |
11 |
actaggtacccagttctgttagagacattgca-gaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaag |
109 |
Q |
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| T |
4183709 |
actaggtacccagttctgttagagacattgcaagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaag |
4183808 |
T |
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| Q |
110 |
atg |
112 |
Q |
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||| |
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| T |
4183809 |
atg |
4183811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 5970201 - 5970296
Alignment:
| Q |
17 |
tacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaagatg |
112 |
Q |
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| T |
5970201 |
tacccagttctgttagagacattgcagaaccattttcttttcattgctttcgaaaatacactgaaatttgaaccatttgcttgatctgtaaagatg |
5970296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-46
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 17230857 - 17230756
Alignment:
| Q |
11 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaaga |
110 |
Q |
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| T |
17230857 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaaccatttacttgacctgtaaaga |
17230758 |
T |
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| Q |
111 |
tg |
112 |
Q |
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|| |
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| T |
17230757 |
tg |
17230756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 5e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 28049667 - 28049566
Alignment:
| Q |
11 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaaga |
110 |
Q |
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| T |
28049667 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaatcatttacttgacctgtaaaga |
28049568 |
T |
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| Q |
111 |
tg |
112 |
Q |
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|| |
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| T |
28049567 |
tg |
28049566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 28050765 - 28050688
Alignment:
| Q |
11 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaa |
88 |
Q |
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| T |
28050765 |
actaggtacccggttctgttagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaa |
28050688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 27971277 - 27971204
Alignment:
| Q |
15 |
ggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaa |
88 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
27971277 |
ggtacccggttctattagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaa |
27971204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 19851173 - 19851072
Alignment:
| Q |
11 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
19851173 |
actaggtacccagttctgttagagacattgcagaaccatattcttttaattgatttcaaaaataaactcaagttttaaccatttacttgacttgtaaaga |
19851074 |
T |
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| Q |
111 |
tg |
112 |
Q |
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|| |
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| T |
19851073 |
tg |
19851072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 808275 - 808348
Alignment:
| Q |
15 |
ggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaa |
88 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |
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| T |
808275 |
ggtacccggttctgttagagacattgcagaaccatattcttttaattgatttcaaaactacactcaagttttaa |
808348 |
T |
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