View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4314-Insertion-5 (Length: 190)
Name: NF4314-Insertion-5
Description: NF4314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4314-Insertion-5 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 1e-76; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 2551052 - 2551208
Alignment:
| Q |
34 |
tagttttatatatcatattgaattttgttgaaattaattaacaggatacagctgtgtcggtgagagatgtgacatatcgaggatttaccggaacttcttc |
133 |
Q |
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| T |
2551052 |
tagttttatatatcatattgaattttgttgaaattaattatcaggatacagctgtgtcggtgagagatgtgacatatcgaggatttaccggaacttctta |
2551151 |
T |
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| Q |
134 |
tagtgatatagcaattgatttaaagtgtagttcatctggttgttttaagattctatt |
190 |
Q |
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| T |
2551152 |
tagtgatatagcaattgatttaaagtgtagttcttctggttgttttaagattctatt |
2551208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 1831820 - 1831864
Alignment:
| Q |
86 |
tgtgtcggtgagagatgtgacatatcgaggatttaccggaacttc |
130 |
Q |
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| T |
1831820 |
tgtgtcggtgagtgatgtgacatatcgaggatttactggaacttc |
1831864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 1866263 - 1866307
Alignment:
| Q |
86 |
tgtgtcggtgagagatgtgacatatcgaggatttaccggaacttc |
130 |
Q |
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| T |
1866263 |
tgtgtcggtgagtgatgtgacatatcgaggatttactggaacttc |
1866307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 2556730 - 2556806
Alignment:
| Q |
102 |
gtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttgttt |
178 |
Q |
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| T |
2556730 |
gtgacatatcgaggatttaccggaacttctgctagcaagatagctgttaatttaaattgtagctcctctggttgttt |
2556806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 2566530 - 2566644
Alignment:
| Q |
76 |
aggatacagctgtgtcggtgagagatgtgacatatcgaggatttaccggaacttcttctagtgatatagcaattgatttaaagtgtagttcatctggttg |
175 |
Q |
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| T |
2566530 |
aggatacatctgtgaaggtgagttctgtgacatatcgaggatttattggaacttctgctagcaagatagctgttaatttaaattgtagctcccctggttg |
2566629 |
T |
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| Q |
176 |
ttttaagattctatt |
190 |
Q |
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| T |
2566630 |
tttcaatattctatt |
2566644 |
T |
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