View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4314_high_1 (Length: 231)
Name: NF4314_high_1
Description: NF4314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4314_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 4183715 - 4183518
Alignment:
| Q |
17 |
acctagttgctatactcaactaaaattcttgctagcatggttcttgtaaaatcaatgagaagatcaattttccatggctattttggaggatctctctgtg |
116 |
Q |
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| T |
4183715 |
acctagttgctatactcaactaaaactcttgctagcatggttcttgtaaaatcaatgagaagatcaattttccatggctattttggaggatctctctgta |
4183616 |
T |
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| Q |
117 |
aaggcttgaatatttctcggacatcattcagattctaatgttgagctttatttttgattaatcatatgttacaagggaatgattcctatattatgttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4183615 |
aaggcttgaatatttctcggacatcattcagattctaatgttgagctttatttttgattaatcatatgttacaagggaatgattcctatattatgttc |
4183518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 5970198 - 5970088
Alignment:
| Q |
20 |
tagttgctatactcaactaaaattcttgctagcatggttcttgtaaaatcaatgagaagatcaattttccatggctattttggagga--tctctctgtga |
117 |
Q |
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||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||| | || || ||||||||||| |
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| T |
5970198 |
tagttgctatactcaactaaact-cttgctggcatggttcatgtgaaatcaatgcgaagatcaattttccatggctattgtagatgatctctctctgtga |
5970100 |
T |
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| Q |
118 |
aggcttgaatat |
129 |
Q |
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||||||| |||| |
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| T |
5970099 |
aggcttggatat |
5970088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 19851167 - 19851300
Alignment:
| Q |
17 |
acctagttgctatactcaactaaaattcttgctagcatggttcttgtaaaatcaatgagaagatcaattttccatggctattttggaggatctctctgtg |
116 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19851167 |
acctagttgctatactcaactaaaactcttgctagcatggttcttgtgaaatcaatgagaagatcaattttccatggctattttggaggatctctctgtg |
19851266 |
T |
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| Q |
117 |
aaggcttgaatatttctcggacatcattcagatt |
150 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19851267 |
aaggcttgaatatttctcggacatcattcagatt |
19851300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 28049661 - 28049730
Alignment:
| Q |
17 |
acctagttgctatactcaactaaaattcttgctagcatggttcttgtaaaatcaatgagaagatcaattt |
86 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28049661 |
acctagttgctatactcaactaaaactcttgctagcatggttcttgtgaaatcaatgagaagatcaattt |
28049730 |
T |
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