View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315-Insertion-1 (Length: 892)
Name: NF4315-Insertion-1
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315-Insertion-1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 375 - 872
Target Start/End: Complemental strand, 7375950 - 7375469
Alignment:
| Q |
375 |
atcatttatttgatattatcaagctgaatacacaaaaatgagacgtaatttttaatatgaagttgtaatctgtagcactatatttgaataattgaaaacc |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7375950 |
atcatttatttgatattatcaagctgaatacacaaaaatgagacgtagtttttaatatgaagttgtaatctgtagcactatatttg-------------- |
7375865 |
T |
|
| Q |
475 |
tcaacagttactttgctgttggctgaattttatgatccatcacttgtcaagagagtttggaagccactttcattgaagttagttacattgatcacaataa |
574 |
Q |
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| T |
7375864 |
----ctgttactttgctgttggctgaattttatgatccatcacttgtcaagagaatttggaagccactttctttgaagttagttacattgatcacaataa |
7375769 |
T |
|
| Q |
575 |
acacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaag |
671 |
Q |
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|||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375768 |
acacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaac |
7375669 |
T |
|
| Q |
672 |
attcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaaagtgttgtttg |
771 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
7375668 |
attcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccactctttgtgtaagagatgtaag-aagtgttgtttg |
7375570 |
T |
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| Q |
772 |
cttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcc |
871 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375569 |
cttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcc |
7375470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 535 - 872
Target Start/End: Original strand, 7278029 - 7278370
Alignment:
| Q |
535 |
aagccactttcattgaagttagttacattgat--cacaataaacacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaa |
629 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
7278029 |
aagccactttcattgaagttagttacactgatatcacaataaacacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaa |
7278128 |
T |
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| Q |
630 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagc |
729 |
Q |
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| T |
7278129 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagc |
7278228 |
T |
|
| Q |
730 |
tgctccaccctttgtgtgagagatgtaagaaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctcc |
829 |
Q |
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|||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
7278229 |
tgctccactctttgtgtaagagatgtaag-aagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctcc |
7278327 |
T |
|
| Q |
830 |
atcatccttttcaacatttttctattccctccatcttcttcct |
872 |
Q |
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| T |
7278328 |
atcatccttttcaacatttttctattccctccatcttcttcct |
7278370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 7376271 - 7376097
Alignment:
| Q |
8 |
ctttatggctttaattaattactcattactgatcataagcactgattataggattggtttagttgttagtagtccataaggtggaaa--gccaaagaagc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
7376271 |
ctttatggctttaattaattactcattactgatcataagcactgattataggattggtttagt-gttagtagtccataaggtggaaaaagccaaagaagc |
7376173 |
T |
|
| Q |
106 |
agtgaattatattttccccttgttgactcttacattgttcttcatatatgattattagtagaagttcaacaaaagc |
181 |
Q |
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| T |
7376172 |
agtgaattatattttccccttgttgactcttacattgttcttcatatatgattattagtagaaggtcaacaaaagc |
7376097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 205 - 339
Target Start/End: Complemental strand, 7376096 - 7375962
Alignment:
| Q |
205 |
tttcttacagaaaattgctgagtagtctatgacaaatcatattgtatataaattaaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgcta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7376096 |
tttcttacagaaaattgctgagtagtctatgacaaatcatattgtatataaattaaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgcta |
7375997 |
T |
|
| Q |
305 |
ggaaatggttgaaataatggaatagaaggatcact |
339 |
Q |
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| T |
7375996 |
ggaaatggttgaaataatggaatagaaggatcact |
7375962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 7300355 - 7300399
Alignment:
| Q |
8 |
ctttatggctttaattaattactcattactgatcataagcactga |
52 |
Q |
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| T |
7300355 |
ctttatggctttaattaattactgattattgatcataatcactga |
7300399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 259 - 393
Target Start/End: Complemental strand, 27766256 - 27766121
Alignment:
| Q |
259 |
aaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttgata |
358 |
Q |
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||||||||||||||||| ||||||| |||||| ||| | ||| | ||||||||||||| || | |||||| ||||||||||||| ||||||||||| | |
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| T |
27766256 |
aaaaatcctcgaaggttccatccctgaaaatgctagggg-gtgtttggaaatggttgaagtagttgaataggaggatcactatgactatagctcttggtt |
27766158 |
T |
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| Q |
359 |
aatttaccaa--gtgaaaatcatttatttgatattat |
393 |
Q |
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|||||||||| ||||||| |||||||||||||||| |
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| T |
27766157 |
aatttaccaaagatgaaaatgatttatttgatattat |
27766121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 208817 - 208873
Alignment:
| Q |
299 |
gtgctaggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttg |
355 |
Q |
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||||| ||||||||||||| |||| |||||| ||||||||||||| |||||| |||| |
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| T |
208817 |
gtgctcggaaatggttgaagtaattgaataggaggatcactatgactatagcccttg |
208873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 11113319 - 11113229
Alignment:
| Q |
305 |
ggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttgataaatttaccaa--gtgaaaatcatttatttgatattat |
393 |
Q |
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|||||| ||||||||| | |||||| | ||||||||||| |||| | ||| |||||||||||| ||||||| |||||||||||||||| |
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| T |
11113319 |
ggaaatagttgaaatagttgaataggaagatcactatgactataacatttggtaaatttaccaaagatgaaaatgatttatttgatattat |
11113229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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