View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4315-Insertion-2 (Length: 854)

Name: NF4315-Insertion-2
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4315-Insertion-2
NF4315-Insertion-2
[»] chr4 (8 HSPs)
chr4 (6-576)||(38752945-38753515)
chr4 (674-854)||(38753509-38753683)
chr4 (622-671)||(52012904-52012953)
chr4 (623-671)||(9799360-9799408)
chr4 (623-671)||(46720242-46720290)
chr4 (578-610)||(9799360-9799392)
chr4 (578-610)||(52012920-52012952)
chr4 (577-622)||(46720247-46720291)
[»] chr5 (12 HSPs)
chr5 (621-671)||(13421005-13421055)
chr5 (623-671)||(29990088-29990136)
chr5 (623-671)||(38010611-38010659)
chr5 (625-667)||(42331069-42331111)
chr5 (578-620)||(13421007-13421048)
chr5 (623-671)||(13478042-13478090)
chr5 (578-610)||(29990104-29990136)
chr5 (578-610)||(38010611-38010643)
chr5 (622-656)||(4408371-4408405)
chr5 (629-671)||(10292997-10293039)
chr5 (623-669)||(13015509-13015555)
chr5 (580-610)||(42331069-42331099)
[»] chr3 (8 HSPs)
chr3 (623-671)||(34029288-34029336)
chr3 (623-671)||(47186301-47186349)
chr3 (623-671)||(42664799-42664847)
chr3 (628-671)||(31187072-31187115)
chr3 (192-249)||(7006082-7006139)
chr3 (577-610)||(34029287-34029320)
chr3 (578-610)||(42664815-42664847)
chr3 (578-610)||(47186317-47186349)
[»] chr1 (3 HSPs)
chr1 (625-671)||(8809639-8809685)
chr1 (623-669)||(35998380-35998426)
chr1 (580-610)||(8809639-8809669)
[»] chr6 (3 HSPs)
chr6 (623-671)||(34245693-34245741)
chr6 (625-665)||(17330515-17330555)
chr6 (580-609)||(17330515-17330544)
[»] chr2 (4 HSPs)
chr2 (624-669)||(3668008-3668053)
chr2 (638-671)||(10163608-10163641)
chr2 (622-653)||(9207278-9207309)
chr2 (578-608)||(9207278-9207308)


Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 6 - 576
Target Start/End: Original strand, 38752945 - 38753515
Alignment:
Q  6 caattctatcatcatcatcatcaacaacctttcatggatattagcatggaaggattctcacatgcaactatggtgacaacaagtcccaccatgtcatcaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38752945 caattctatcatcatcatcatcaacaacctttcatggatattagcatggaaggattctcacatgcaactatggttacaacaagtcccaccatgtcatcaa 38753044  T
Q  106 atggtcacttgaccccaaagaacaacacattcaaaccaatcagaaaaagatctagagcttcaaagaaaactccaattactcttctcaatgccaatagcac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38753045 atggtcacttgaccccaaagaacaacacattcaaaccaatcagaaaaagatctagagcttcaaagaaaactccaatcactcttctcaatgccaatagcac 38753144  T
Q  206 aaatttcagggctttggttcaacaattcacaggttgtcctaccataaaatctgccatgtcatttgcaacacacaagggacctatcaccttgaatttccaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38753145 aaatttcagggctttggttcaacaattcacaggttgtcctaccataaaatctgccatgtcatttgcaacacacaagggacctatcaccttgaatttccaa 38753244  T
Q  306 cagtctcatcatgtacctgtgccacaaccacatcaactggttcctaagcaacaattgatgcaagaacagcaccaaagtcaaagtaattttcttccaactg 405  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38753245 caacctcatcatgtacctgtgccacaaccacatcaactggttcctaagcaacaattgatgcaagaacagcaccaaagtcaaagtaattttcttccaactg 38753344  T
Q  406 gcttggaggtctctgattatggtttgcatatgaataatgatttgtccaatgttttatatatgtgatgaaaatttctataaaggattaatcaagtatatgc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38753345 gcttggaggtctctgattatggtttgcatatgaataatgatttgtccaatgttttatatatgtgatgaaaatttctataaaggattaatcaagtatatgc 38753444  T
Q  506 aataaccccatagagttgtatcatatagctatcttaggaaataaaataaattcttctccatttaaaggctg 576  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38753445 aataactccatagagttgtatcatatagctatcttaggaaataaaataaattcttctccatttaaaggctg 38753515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 674 - 854
Target Start/End: Original strand, 38753509 - 38753683
Alignment:
Q  674 aaggctgtattggtatgaatcccaatttttaatcttgtcctttttctacggtgaagtactacttcacatattacaacaattttcttattcttgttaattg 773  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||    
T  38753509 aaggctgtattg-tatgaatcc-aatttttaatcttgtcctttttctacggtga-gtactacttcacatattacaacaattt-cttattcttgtta-ttg 38753603  T
Q  774 actcttgttctttttgttgtactttgtatatggtatacaaatttggttatttgtaatgtgacagtgcttccattctatcta 854  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38753604 actcttgttctttttgttgtactt-gtatatggtatacagatttggttatttgtaatgtgacagtgcttccattctatcta 38753683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 622 - 671
Target Start/End: Complemental strand, 52012953 - 52012904
Alignment:
Q  622 tggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||    
T  52012953 tggatagcacttgtgtaccattatgttatataacattagctaattaaggt 52012904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 623 - 671
Target Start/End: Original strand, 9799360 - 9799408
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  9799360 ggatagcacttgtgtaccattatgttatataacattagctaattaaggt 9799408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 623 - 671
Target Start/End: Complemental strand, 46720290 - 46720242
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  46720290 ggatagcacttctttaccattatgttatataacattagtcaattaaggt 46720242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Original strand, 9799360 - 9799392
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||||    
T  9799360 ggatagcacttgtgtaccattatgttatataac 9799392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 52012952 - 52012920
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||||    
T  52012952 ggatagcacttgtgtaccattatgttatataac 52012920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 622
Target Start/End: Complemental strand, 46720291 - 46720247
Alignment:
Q  577 gggatagcacttgtgtaccattatgttatataaccattagtcaatt 622  Q
    |||||||||||| | |||||||||||||||||| ||||||||||||    
T  46720291 gggatagcacttctttaccattatgttatataa-cattagtcaatt 46720247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 621 - 671
Target Start/End: Original strand, 13421005 - 13421055
Alignment:
Q  621 ttggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13421005 ttggatagcacttgtgtaccattatgttatataacattagtcaagtaaggt 13421055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 671
Target Start/End: Complemental strand, 29990136 - 29990088
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29990136 ggatagcacttgtgtaccattatgttatataacattagccaattaaggt 29990088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 671
Target Start/End: Original strand, 38010611 - 38010659
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38010611 ggatagcacttgtgtaccattatgttatataacattagccaattaaggt 38010659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 667
Target Start/End: Original strand, 42331069 - 42331111
Alignment:
Q  625 atagcacttgtgtaccattatgttatataacattagtcaatta 667  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  42331069 atagcacttgtgtaccattatgttatataacattagccaatta 42331111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 620
Target Start/End: Original strand, 13421007 - 13421048
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataaccattagtcaa 620  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  13421007 ggatagcacttgtgtaccattatgttatataa-cattagtcaa 13421048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 671
Target Start/End: Original strand, 13478042 - 13478090
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    ||||||||| ||||||| ||||||||||||||||||||  |||||||||    
T  13478042 ggatagcacatgtgtacgattatgttatataacattagctaattaaggt 13478090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 29990136 - 29990104
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||||    
T  29990136 ggatagcacttgtgtaccattatgttatataac 29990104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Original strand, 38010611 - 38010643
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||||    
T  38010611 ggatagcacttgtgtaccattatgttatataac 38010643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 622 - 656
Target Start/End: Original strand, 4408371 - 4408405
Alignment:
Q  622 tggatagcacttgtgtaccattatgttatataaca 656  Q
    |||||||||||||||| ||||||||||||||||||    
T  4408371 tggatagcacttgtgtgccattatgttatataaca 4408405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 671
Target Start/End: Complemental strand, 10293039 - 10292997
Alignment:
Q  629 cacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||| ||||||||||||||| | ||||||||||    
T  10293039 cacttgtgtaccataatgttatataacattggccaattaaggt 10292997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 623 - 669
Target Start/End: Complemental strand, 13015555 - 13015509
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaag 669  Q
    ||||| |||||| ||| ||||||||||||||||||||| ||||||||    
T  13015555 ggataccacttgcgtatcattatgttatataacattagccaattaag 13015509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 580 - 610
Target Start/End: Original strand, 42331069 - 42331099
Alignment:
Q  580 atagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||    
T  42331069 atagcacttgtgtaccattatgttatataac 42331099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 671
Target Start/End: Original strand, 34029288 - 34029336
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34029288 ggatagcacttgtgtaccattatgttatataacattagccaattaaggt 34029336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 623 - 671
Target Start/End: Complemental strand, 47186349 - 47186301
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47186349 ggatagcacttgtgtaccattatgttatataacattagccaattaaggt 47186301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 623 - 671
Target Start/End: Complemental strand, 42664847 - 42664799
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  42664847 ggatagcacttgtgtaccattatgttatataacattagctaattaaggt 42664799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 671
Target Start/End: Original strand, 31187072 - 31187115
Alignment:
Q  628 gcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  31187072 gcacttgtgtaccattatgttatataacattagccaattaaggt 31187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 7006139 - 7006082
Alignment:
Q  192 aatgccaatagcacaaatttcagggctttggttcaacaattcacaggttgtcctacca 249  Q
    ||||||||||  ||||||||||| ||||||||| ||| ||||||||| ||||||||||    
T  7006139 aatgccaatacaacaaatttcagagctttggtttaactattcacaggctgtcctacca 7006082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 610
Target Start/End: Original strand, 34029287 - 34029320
Alignment:
Q  577 gggatagcacttgtgtaccattatgttatataac 610  Q
    ||||||||||||||||||||||||||||||||||    
T  34029287 gggatagcacttgtgtaccattatgttatataac 34029320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 42664847 - 42664815
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||||    
T  42664847 ggatagcacttgtgtaccattatgttatataac 42664815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 610
Target Start/End: Complemental strand, 47186349 - 47186317
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||||    
T  47186349 ggatagcacttgtgtaccattatgttatataac 47186317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 625 - 671
Target Start/End: Original strand, 8809639 - 8809685
Alignment:
Q  625 atagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  8809639 atagcacttgtgtaccattatgttatataacattagccaattaaggt 8809685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 623 - 669
Target Start/End: Complemental strand, 35998426 - 35998380
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaag 669  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  35998426 ggatagcacctgtgtaccattatgttatataacattagccaattaag 35998380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 580 - 610
Target Start/End: Original strand, 8809639 - 8809669
Alignment:
Q  580 atagcacttgtgtaccattatgttatataac 610  Q
    |||||||||||||||||||||||||||||||    
T  8809639 atagcacttgtgtaccattatgttatataac 8809669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 623 - 671
Target Start/End: Complemental strand, 34245741 - 34245693
Alignment:
Q  623 ggatagcacttgtgtaccattatgttatataacattagtcaattaaggt 671  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  34245741 ggataacacttgtgtaccattatattatataacattagccaattaaggt 34245693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 665
Target Start/End: Original strand, 17330515 - 17330555
Alignment:
Q  625 atagcacttgtgtaccattatgttatataacattagtcaat 665  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  17330515 atagcacttgtgtaccattatgttatataatattagccaat 17330555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 609
Target Start/End: Original strand, 17330515 - 17330544
Alignment:
Q  580 atagcacttgtgtaccattatgttatataa 609  Q
    ||||||||||||||||||||||||||||||    
T  17330515 atagcacttgtgtaccattatgttatataa 17330544  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 669
Target Start/End: Original strand, 3668008 - 3668053
Alignment:
Q  624 gatagcacttgtgtaccattatgttatataacattagtcaattaag 669  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||    
T  3668008 gatagcacttgtgtaccattatattatataatattagccaattaag 3668053  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 671
Target Start/End: Complemental strand, 10163641 - 10163608
Alignment:
Q  638 accattatgttatataacattagtcaattaaggt 671  Q
    ||||||||||||||||||||||||||||||||||    
T  10163641 accattatgttatataacattagtcaattaaggt 10163608  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 653
Target Start/End: Complemental strand, 9207309 - 9207278
Alignment:
Q  622 tggatagcacttgtgtaccattatgttatata 653  Q
    ||||||||||||||||||||||||||||||||    
T  9207309 tggatagcacttgtgtaccattatgttatata 9207278  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 578 - 608
Target Start/End: Complemental strand, 9207308 - 9207278
Alignment:
Q  578 ggatagcacttgtgtaccattatgttatata 608  Q
    |||||||||||||||||||||||||||||||    
T  9207308 ggatagcacttgtgtaccattatgttatata 9207278  T

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