View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315-Insertion-3 (Length: 835)
Name: NF4315-Insertion-3
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315-Insertion-3 |
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| [»] chr5 (12 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 697; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 835
Target Start/End: Complemental strand, 11903113 - 11902293
Alignment:
| Q |
8 |
ttgggcaatactcatcactacacgtagcaactatgtcgccgataatatttctgttgccaggtatgttttgaaagggcttaacagacatgaatctcaattg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903113 |
ttgggcaatactcatcactacacgtagcaactatgtcgccgataatatttctgttgccaggtatgttttgaaagggcttaacagacatgaatctcaattg |
11903014 |
T |
|
| Q |
108 |
ttattccaacaaattcgtgggccaacttcaacttcaaccaacaacaaacaagacaacatcgaatgggaactcgtgaatgattgtggtggagtccctcttg |
207 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11903013 |
ttattccaacaaattcgtgggcaaacttcaacctcaaccaacaacaaacaagacaacatcgaatgggaactcgtgaaggattgtggtggagtccctcttg |
11902914 |
T |
|
| Q |
208 |
cgattgtgaccgtagcaatgttgatgaagaaccaaagtgctggtggtgtttcaattttggcagcagaccaaatagcagaagtggagaggaagtttctaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902913 |
cgattgtgaccgtagcaatgttgatgaagaaccaaagtgctggtggtgtttcaattttggcagcagaccaaatagcagaagtggagaggaagtttctaca |
11902814 |
T |
|
| Q |
308 |
ggagctcaagtttatgtattacaaggatcttccaatgcttcacaagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgag |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902813 |
agagctcaagtttatgtattacaaggatcttccaatgcttcacaagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgag |
11902714 |
T |
|
| Q |
408 |
agattaattgaactctggactgctgaaggatttctcaccattccacaacaacaattttgtcgaccttatttcaatgactttgttccgttggttttccaac |
507 |
Q |
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| T |
11902713 |
agattaattgaactctggactgctgaaggatttctcaccattccacaacaacaattttgtcgaccttgtttcaatgactttgttccgttggttttccaac |
11902614 |
T |
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| Q |
508 |
aagtggaagaaaaagaagatggtgttgtaagtagtcacttatatagaatgaatcgggttaatgcataaactcgcaaggctagtcacctctgaagaaaaac |
607 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
11902613 |
aagtggaagaaaaagaagaaggtgttgtaagtaatcactcatatagaatgaatc-ggttaatgcataaactcgcaaggctagtcacctgtgaag-aaaac |
11902516 |
T |
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| Q |
608 |
atgactgtgaattcgatggggggataaagttacaggtggaatgttgcgagcttcatttgattttgctttgggatctgtcatgtggggatcccagaatcgt |
707 |
Q |
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| T |
11902515 |
atgactgtgaattcgat-gggggataaagttaaaggtggaatgttgcgagcttcatttgattttgcttt-ggatctgtcatgt-gggatcccagacttgt |
11902419 |
T |
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| Q |
708 |
tgttcgataaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcggcttccacacgagg-gaagatggacagcatgaacatggc |
806 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| ||| ||||| || |
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| T |
11902418 |
tgttcgataaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagat-gacaacatcaacat-gc |
11902321 |
T |
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| Q |
807 |
gataagatcttcaacacccttcaagtccc |
835 |
Q |
| |
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|||||||||||||||| |||||||||||| |
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| T |
11902320 |
gataagatcttcaaca-ccttcaagtccc |
11902293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 351 - 518
Target Start/End: Original strand, 11859754 - 11859921
Alignment:
| Q |
351 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattc |
450 |
Q |
| |
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|||||||| || ||||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||| | || || |
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| T |
11859754 |
aagttatgcttcgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatc |
11859853 |
T |
|
| Q |
451 |
cacaacaacaattttgtcgaccttatttcaatgactttgttccgttggttttccaacaagtggaagaa |
518 |
Q |
| |
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|| ||||||||||| ||| | ||| |||||| ||||||||||| ||||||||||| |||| ||||||| |
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| T |
11859854 |
cagaacaacaatttggtcaagcttgtttcaaagactttgttcctttggttttccatcaagcggaagaa |
11859921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 354 - 518
Target Start/End: Original strand, 11827622 - 11827786
Alignment:
| Q |
354 |
ttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattccac |
453 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||| |||||| ||||| | || |||| |
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| T |
11827622 |
ttatgctttgcatattgttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactggtgaagggtttcttatcaatccag |
11827721 |
T |
|
| Q |
454 |
aacaacaattttgtcgaccttatttcaatgactttgttccgttggttttccaacaagtggaagaa |
518 |
Q |
| |
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||||||||||| ||| ||| |||| | ||||||||||| ||||||||||| |||| ||||||| |
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| T |
11827722 |
aacaacaatttggtcatgcttgtttcgaagactttgttcctttggttttccatcaagcggaagaa |
11827786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 518
Target Start/End: Original strand, 12038513 - 12038695
Alignment:
| Q |
351 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttct-------- |
442 |
Q |
| |
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||||| || |||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| |
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| T |
12038513 |
aagttgtgctttgcatattgttcattgtttccagaagattatttaattgatgccgagagattaattcaactttggacggctgaaggatttctaacaattt |
12038612 |
T |
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| Q |
443 |
-------caccattccacaacaacaattttgtcgaccttatttcaatgactttgttccgttggttttccaacaagtggaagaa |
518 |
Q |
| |
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|| || |||| ||||||||||| ||||| ||| |||||| ||||||||||| |||||||| || |||||||||||| |
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| T |
12038613 |
cctcaaacaacaatccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttggtttttcatcaagtggaagaa |
12038695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 11731348 - 11731517
Alignment:
| Q |
276 |
caaatagcagaagtggagaggaagtttctacaggagctcaagtttatgtattacaaggatcttccaatgcttcacaagttatgttttgcatattgttcat |
375 |
Q |
| |
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||||||| ||| ||||||||| |||||||| | ||||||||||||| |||||| |||||||||| | | | || || || ||||||| |||||||| |
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| T |
11731348 |
caaatagaagacgtggagagggagtttctaaacgagctcaagtttagatattacgaggatcttcccacatgttataaattgtgctttgcattttgttcat |
11731447 |
T |
|
| Q |
376 |
tgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcac |
445 |
Q |
| |
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|||||||| | || ||||||||||||| |||||||||||| |||| ||| ||||||||||||| |||| |
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| T |
11731448 |
tgtttccagaacatcatttgattgatgccgagagattaattcaactttggtttgctgaaggatttatcac |
11731517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 645 - 782
Target Start/End: Original strand, 11731723 - 11731858
Alignment:
| Q |
645 |
ggaatgttgcgagcttcatttgattttgctttgggatctgtcatgtggggatcccagaatcgttgttcgataaagcaaagaaactgagaaccattctttt |
744 |
Q |
| |
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|||||| |||||||||| |||||||||| ||||| |||| || |||||| || ||||| ||| |||| || ||||||||||||||| |||||| | || |
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| T |
11731723 |
ggaatgctgcgagcttcgtttgattttggtttgg-atctttcgtgtggg-attccagattcgatgtt---tatagcaaagaaactgaggaccattttatt |
11731817 |
T |
|
| Q |
745 |
gccgtacag---cactaacaaccctcggcttccacacgagg |
782 |
Q |
| |
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||| |||| || |||||||||||||||||||||||||| |
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| T |
11731818 |
gccatacaaaaacattaacaaccctcggcttccacacgagg |
11731858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 718 - 782
Target Start/End: Original strand, 11828011 - 11828075
Alignment:
| Q |
718 |
agcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcggcttccacacgagg |
782 |
Q |
| |
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|||||||||||| || |||||||||||||| |||| || |||||||||||| ||||| ||||||| |
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| T |
11828011 |
agcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgagg |
11828075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 774
Target Start/End: Original strand, 11860144 - 11860202
Alignment:
| Q |
716 |
aaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcggcttcc |
774 |
Q |
| |
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|||||||||||||| || ||| |||||||||| |||| || |||||||||||||||||| |
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| T |
11860144 |
aaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttcc |
11860202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 11975064 - 11974974
Alignment:
| Q |
351 |
aagttatgttttgcatattgttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttc |
441 |
Q |
| |
|
||||| ||||||| || ||||||||||||||| |||| |||||||||||| |||||||||||| | |||| ||| || |||||||||| |
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| T |
11975064 |
aagttttgttttgaattttgttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 692 - 774
Target Start/End: Original strand, 12038888 - 12038970
Alignment:
| Q |
692 |
gggatcccagaatcgttgttcgataaagcaaagaaactgagaaccattcttttgccgtacagcactaacaaccctcggcttcc |
774 |
Q |
| |
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||||||||||| | |||| || ||||| || |||||||| |||||||||||||| |||| |||| |||||||||||||||| |
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| T |
12038888 |
gggatcccagattgtgtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcc |
12038970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 11731226 - 11731301
Alignment:
| Q |
133 |
cttcaacttcaaccaacaacaaacaagacaacatcgaatgggaactcgtgaatgattgtggtggagtccctcttgcgat |
211 |
Q |
| |
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||||||||||||||||||||||||||||||| || || ||| | ||||| |||||||| ||||| ||||||||||| |
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| T |
11731226 |
cttcaacttcaaccaacaacaaacaagacaa---cggattggagattgtgaaggattgtgggggagtgcctcttgcgat |
11731301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 584
Target Start/End: Original strand, 11827839 - 11827878
Alignment:
| Q |
544 |
acttatatagaatgaatcgggttaatgcataaactcgcaag |
584 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |
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| T |
11827839 |
acttatatagaatgaatcgg-ttaatgcataaactcgcaag |
11827878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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