View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315-Insertion-4 (Length: 790)
Name: NF4315-Insertion-4
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 273 - 786
Target Start/End: Complemental strand, 39032631 - 39032118
Alignment:
| Q |
273 |
tcaaatacacattgtttgcaacatttattttagataagtgttagcaacattatttctaactcatacgtgaaattgatgtggtcccataatttgaaaattt |
372 |
Q |
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| T |
39032631 |
tcaaatacacattgtttaaaacatttattttagataagtgttagcaacattatttctaactcatacgtgaaattgatgtggtttcataatttgaaaattt |
39032532 |
T |
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| Q |
373 |
aacatatatga-gtggtgataatcacatgaatttcactcaataagaaagtgaacattgtgtttttattgttgaacataaccttaatagttttaattcaaa |
471 |
Q |
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| T |
39032531 |
aacacatatgaagtggtgataaccacatgaatttcactcaataagaaaatgaacattgtgtttttattgtcgaacataaccttaatagttttaattcaaa |
39032432 |
T |
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| Q |
472 |
gaagaagnnnnnnntctagtaataacgacttgaattaacatgtgtttaattatccaaatatgttggcaaatgtcatgtatgtatcaattaacatgtaact |
571 |
Q |
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| T |
39032431 |
gaagaagaaaaaaatctagtaataatgacttgaattaacatgtgtttaattatccaaatatgttgacaaatgtcatgtatgtatcaattaacatgtaact |
39032332 |
T |
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| Q |
572 |
gaatatttttcttatctctaactaattttattaaatatcaggtgcatgtgttagctgtcccacaaaatggatctctcatctttaatccaagtcataaagg |
671 |
Q |
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| T |
39032331 |
gaatatttttcttatctctaactaattttattaaatatcaggtgcatgtgttagctgtcccacaaaatggatctctcatctttaatccaagtcataaagg |
39032232 |
T |
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| Q |
672 |
aaagggattgacactcttgattgtaatgatggtgatgatatttattgctatcttgagttttctattcgtgaaatcttggagtgacaaagagagaaatgca |
771 |
Q |
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| T |
39032231 |
aaagggattgacactcttgattgtaatgatggtgatgatatttattgctatcttgagttttctattcttg-aatcttggagtgacaaagagagaaatgca |
39032133 |
T |
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| Q |
772 |
tttgtgtgcatcact |
786 |
Q |
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| T |
39032132 |
tttgtgtgcatcact |
39032118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 39032886 - 39032733
Alignment:
| Q |
7 |
acttttgtacctgaaaataccaaatagtacattgtacccaaaaaataatattactactttcacaatacaatttgcgttagtagcatatgactcactttaa |
106 |
Q |
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| T |
39032886 |
acttttgtacctgaaaataccaaatagtacattgtacccaaaaaataatattactactttcacaatacaatttgcattagtagcatatgactcactttaa |
39032787 |
T |
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| Q |
107 |
tatttttatactattttcacaaaatttctctcttggtcttgtatcttataattg |
160 |
Q |
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| T |
39032786 |
tatttttatactattttcacaaaatttctctcttggtcttgtatcttataattg |
39032733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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