View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315-Insertion-5 (Length: 503)
Name: NF4315-Insertion-5
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315-Insertion-5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 503
Target Start/End: Original strand, 38311818 - 38312313
Alignment:
| Q |
8 |
aaagacactcatacccacacatacccgcacacatatcctcagttaacgatgggcattatctttattaatattgtttgttttgcatatgcaacaggatgtg |
107 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311818 |
aaagacactcatacccacacatacccacacacatatcctcagttaacaatgggcattatctttattaatattgtttgttttgcatatgcaacaggatgtg |
38311917 |
T |
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| Q |
108 |
tcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtggtgcattagccggatcagggagtccaccaatttgtcattcagatc |
207 |
Q |
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| T |
38311918 |
tcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtggtgcattagccggatcagggagtccaccaatttgtcattcagatc |
38312017 |
T |
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| Q |
208 |
aatttgacgatgttgtcaacatatataatcagtttttactaagctacgagcaactctattagctttttctaataagtcacacactatatatttcttgaga |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38312018 |
aatttgacgatgttgtcaacatatataatcaatttttactaagctacgagcaactctattagctttttctaataagtcgcacactatatatttcttgaga |
38312117 |
T |
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| Q |
308 |
aaacaattccattcacccattatctaatggtggaagagaaactgctgctgttggcagcagcacgacttgttcaggacctaaaactgtaagaagatggttg |
407 |
Q |
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| T |
38312118 |
aaacaattccattcacccattatctaatggtggaagagcaactgctgctgttggcagcagcacaacttgttcaggacctaaaactgtaagaagatggttg |
38312217 |
T |
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| Q |
408 |
aaagaaagaggaaagcaaaatacataatgctcagcagcacactaccattactgtggctgctttagcttccattgtggccacaacatcagcctcgtc |
503 |
Q |
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| T |
38312218 |
aaagaaagaggaaagcaaaatacataatgctcagcagcacactactattactgtggctgctttagcttccattgtggccacaacagcagcctcgtc |
38312313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 38268316 - 38268420
Alignment:
| Q |
308 |
aaacaattccattcacccattatctaatggtggaagagaaactgctgctgttggcagcagcacgacttgttcaggacctaaaactgtaagaagatggttg |
407 |
Q |
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||||||||||||||||||||||| ||||||||||||| || ||| | |||||||| | ||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
38268316 |
aaacaattccattcacccattattcaatggtggaagagcaagtgccggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggttg |
38268415 |
T |
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| Q |
408 |
aaaga |
412 |
Q |
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||||| |
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| T |
38268416 |
aaaga |
38268420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 91 - 268
Target Start/End: Original strand, 38268072 - 38268246
Alignment:
| Q |
91 |
atatgcaacaggatgtgtcgccattaacatcagatagaatatctctcagcagcgagcctttgaatcatggtggtgcattagccggatcagggagtccacc |
190 |
Q |
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||||| ||||||| ||||| || |||||||||| |||| |||||| ||||||||| ||||||||| ||| || ||||| | ||| ||| |||||| |
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| T |
38268072 |
atatgtaacaggaagtgtctccgttaacatcaggtagattatctcacagcagcgaacctttgaatggtggcagttcattaactggaacagacagtcca-- |
38268169 |
T |
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| Q |
191 |
aatttgtcattcagatcaatttgacgatgttgtcaacatatataatcagtttttactaagctacgagcaactctatta |
268 |
Q |
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|||| |||||||||| ||||||||||||||||||| | || ||| | ||||||||| |||| || ||||||||||| |
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| T |
38268170 |
-atttctcattcagatgaatttgacgatgttgtcaaggtttacaataaatttttactacgctatgaacaactctatta |
38268246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 468
Target Start/End: Original strand, 38268434 - 38268493
Alignment:
| Q |
409 |
aagaaagaggaaagcaaaatacataatgctcagcagcacactaccattactgtggctgct |
468 |
Q |
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|||||||| ||||||| || ||| |||||||||| |||| |||| ||||||||||||||| |
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| T |
38268434 |
aagaaagaagaaagcagaacacaaaatgctcagctgcacgctactattactgtggctgct |
38268493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 31707711 - 31707668
Alignment:
| Q |
373 |
cttgttcaggacctaaaactgtaagaagatggttgaaagaaaga |
416 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
31707711 |
cttgttcaggacctaaaacagtaggaagatggttgaaagaaaga |
31707668 |
T |
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