View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4315_high_1 (Length: 729)

Name: NF4315_high_1
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4315_high_1
NF4315_high_1
[»] chr1 (1 HSPs)
chr1 (14-729)||(35340097-35340813)


Alignment Details
Target: chr1 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 14 - 729
Target Start/End: Original strand, 35340097 - 35340813
Alignment:
Q  14 agaggtaaggttagttaaatcttgaaatccatttggaatagtgccattgagataattgatagagagatcaagctcagtcaagtttttcaatgtggtgaat 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340097 agaggtaaggttagttaaatcttgaaatccattaggaatagtgccattgagataattgatagagagatcaagctcagtcaagtttttcaatgtggtgaat 35340196  T
Q  114 tcatttggaatcacgccggttaacttgttctgaaagagatgaagcagccgcaagccttttatattaactaactcgatcggtatctctcctgtaagaagat 213  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35340197 tcatttggaatcacaccggttaacttgttctgaaagagatgaagcagccgcaagccttttatattaaccaactcgatcggtatctctcctgtaagaagat 35340296  T
Q  214 tctctgaaaaatcaatctcaattgcaacagaaaggtttccaatctcccttggaatatttcctgtcaactcattcctgtaaagg-tatagcttctttagga 312  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  35340297 tctctgaaaaatcaatttcaattgcaacagaaaggtttccaatctcccttggaatattacctgtcaactcattcctgtaaagggtatagtttctttagga 35340396  T
Q  313 cttcaaggtttccaagctcctttggaattgatcccacaagcttgttctgataaagagcaagaatctccaaatttgtacagtttccaagctctttaggtat 412  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340397 catcaaggtttccaagctcctttggaattgatcccacaagcttgttctgataaagagcaagaatctccaaatttgtacagtttccaagctctttaggtat 35340496  T
Q  413 accaccatgaagattattttccctaaggaccaaacattgcaagttcttgagtaacccaagttcttttggtatttcaccacttatctgattttgagtcaaa 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340497 accaccatgaagattattttccctaaggaccaaacattgcaagttcttgagtaacccaagttcttttggtatttcaccacttatctgattttgagtcaaa 35340596  T
Q  513 ccaagatactccaagctttcacatccacctatctcttgaggtagacttcctgagatcatattctgtccggctctaaaccggatcaattttttaaggttcc 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35340597 ccaagatactccaagctttcacatccacctatctcttgaggtagacttcctgagatcatattctgtccggctctaaaccggatcaatcttttaaggttcc 35340696  T
Q  613 cgatagaaggcggaaaaggtccaatgagatgattggtgtatagagtaactattgagagtgaagaaaggttaccaattgcatctggtaaaggtccagagag 712  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340697 cgatagaaggcggaaaaggtccactgagatgattggtgtatagagtaactattgagagtgaagaaaggttaccaattgcatctggtaaaggtccagagag 35340796  T
Q  713 ctggttgtttgaaagat 729  Q
    |||||||||||||||||    
T  35340797 ctggttgtttgaaagat 35340813  T

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