View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4315_high_3 (Length: 555)
Name: NF4315_high_3
Description: NF4315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4315_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 138 - 541
Target Start/End: Original strand, 45684356 - 45684759
Alignment:
| Q |
138 |
cagggagggtaccttcactgcccaagatagaattgccttctctgtaggagatcctgaaatctctgtctctccaccatcctgccaaagcaagtacgctaca |
237 |
Q |
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| T |
45684356 |
cagggagggtaccttcactgcccaagatagaattgccttctctgtaggagatcctgaaatctctgtctctccaccatcctgccaaagcaagtacgctaca |
45684455 |
T |
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| Q |
238 |
gtcatagatagcaatgctaataattctataatgcaaacattcatgaaataagaatcacaataatcaagattctcaaacaataaatccaaccgaccaaaag |
337 |
Q |
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| T |
45684456 |
gtcatagatagaaatgctaataattctataatgcaaacattaatgaaataagaatcacaataatcaagattctcaaataataaatccaaccgaccaaaag |
45684555 |
T |
|
| Q |
338 |
aaactgttagtgttggactacaacgagatccttaattggggtaatcaagtgccaaatatcacaacataatagttgttaaaattaagtacaaaggcaagac |
437 |
Q |
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| T |
45684556 |
aaactgttagtgttggactacaacgagatccttaattggggtaatcaagtgccaaatatcacaacataatagttgttaaaattaagtacaaaggcaagac |
45684655 |
T |
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| Q |
438 |
ataccttaggaatgaaaatattgcctgttgtattttgtgctatgccttcatttatcagagataaaacttctggatgcaattttgacgagtcatctggtgg |
537 |
Q |
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| T |
45684656 |
ataccttaggaatgaaaatattgcctgttgtattttgtgctatgccttcatttatcagagataaaacttctggatgcaattttgacgagtcatctggtgg |
45684755 |
T |
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| Q |
538 |
attt |
541 |
Q |
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| T |
45684756 |
attt |
45684759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 45684223 - 45684323
Alignment:
| Q |
5 |
agaatctttgatcttgatctgacaagttcaaaattcattcccaactgccacgagaattcaataatttgaacttcaaatcaatacgttaatcaaggaatag |
104 |
Q |
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| T |
45684223 |
agaatctttgatcttgatctgacaagttcaaaattcattcccaactgccacgagaattcaataatttgaacttcaaatcaatacgttaatcaaggaatag |
45684322 |
T |
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| Q |
105 |
a |
105 |
Q |
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| T |
45684323 |
a |
45684323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 467 - 541
Target Start/End: Complemental strand, 1441773 - 1441699
Alignment:
| Q |
467 |
gtattttgtgctatgccttcatttatcagagataaaacttctggatgcaattttgacgagtcatctggtggattt |
541 |
Q |
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| T |
1441773 |
gtattctgtgcaatgctttcatttatcagagataatgcttctggatggaactttgaagagtcatctggtggattt |
1441699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 1442968 - 1442894
Alignment:
| Q |
143 |
agggtaccttcactgcccaagatagaattgccttctctgtaggagatcctgaaatctctgtctctccaccatcct |
217 |
Q |
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| T |
1442968 |
agggtaccttgactgcccatgaaagaattgccttctctgtcggtgatcctgaaacctctagctctccaccatcct |
1442894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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